Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo20g00697 | ATGGCAGAGTGTGGCAGAAGAGACAGAAAGCTAACCAGGGTTAGAGAACGTGGGTTAGTCTTCTTCAGAGCCGGAGAGGTAGGTTTGGGGTTTGTCGAGCTCCAGAGCTTTACAGGAGGAAGAAGGAAGCTGCTATCAGATATCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCGGAAGTGACTTCTTATACATTCTACTGATCTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCATATTTCAAACAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCGATATCTATCTTCAAAGGCATAGTTCGGTCGATTCTCCATGTCGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCGAATGGAAGTTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTCGAACATGACTGCTCCGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGA | 732 | 46.17 | MAECGRRDRKLTRVRERGLVFFRAGEVGLGFVELQSFTGGRRKLLSDINKRIKLQNRLNSELGSDFLYILLIFFDSSELIPVLHISNNLMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW | 243 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3455420 | 3457186 | + | CmoCh20G006970.1 | Cmo20g00697 | 405014 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo20g00697 | 243 | PANTHER | - | 90 | 243 | IPR044249 | - | |
| Cmo20g00697 | 243 | SUPERFAMILY | RING/U-box | 177 | 235 | - | - | |
| Cmo20g00697 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 229 | IPR001841 | - | |
| Cmo20g00697 | 243 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 90 | 243 | - | - | |
| Cmo20g00697 | 243 | Pfam | Ring finger domain | 186 | 229 | IPR001841 | - | |
| Cmo20g00697 | 243 | SMART | ring_2 | 187 | 228 | IPR001841 | - | |
| Cmo20g00697 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 234 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01866 | Cmo-Chr4:9363990 | Cmo20g00697 | Cmo-Chr20:3455420 | 5.03E-21 | dispersed | |
| Cmo18g00766 | Cmo-Chr18:9245137 | Cmo20g00697 | Cmo-Chr20:3455420 | 8.71E-06 | dispersed | |
| Cmo19g00856 | Cmo-Chr19:8293519 | Cmo20g00697 | Cmo-Chr20:3455420 | 2.48E-20 | dispersed | |
| Cmo20g00697 | Cmo-Chr20:3455420 | Cmo15g01308 | Cmo-Chr15:8984568 | 1.42E-13 | dispersed | |
| Cmo02g00242 | Cmo-Chr2:1139058 | Cmo20g00697 | Cmo-Chr20:3455420 | 8.60E-97 | transposed | |
| Cmo11g01816 | Cmo-Chr11:12725811 | Cmo20g00697 | Cmo-Chr20:3455420 | 4.81E-59 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo20g00697 | K16285 | - | csv:101216645 | 300.056 |