Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00702 ATGAGTGGTGGCCGGCAGCGGACCCTCGGAGTTGGGGTTCAGCATGTTTTAGACCATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTATTATGCAGTTCAGGGCGATGGTGATCAGTCTGGAGGGAATATATTTTGGGCAGATGCAACGTCTAGAATGAATTATTCATACTTTGGTGACACCGTTGTATTGGATACAACATTTAGAAAAAACCAGTATAGGGTGCCTCTTGCTGCGTTTACAGGGTTTAATCATCATGGTCAGCCAGTGTTGTTTGGATGTGCATTGGTTCTTCATGAGTCTGAATCTTCATTCATTTGGCTCTTCCAAACTTGGCTTCAAGCAATGTCTGGACGCCAACCAATTTCCATTACAACTGACCCAGAGAGGCTTATCCAGGTTGCTGTTGTGCAGGTTCTTCCAGGTACCCGACATCGTTTTTGCAAGTGGGCTATATTCAGAGAAACACTAGAGAAGTTGTCTCATCTCTGTCAATCTCATCCTACTTTTGAAACTGAATTTAGAAAATGTGTTAATGAGGCTGAGACAATTGAAGAATTTGAGTCCTGTTGGGAATCCCTTCTGAATAGATATTACATTATGGATAATGACTGGCTTCAGTTAATGTATAGTGCTAGACAACAGTGGGTACCCGTTTACATGAGGGATACTTTCTTTGGAGAATTGTCAATAAATGAGAGCTATAAGAGTTTGAATTTGTTTTTTGATGGATATGTTACTGCGTCCACCACGATACAGATGTTGGTTAGGCAGTACGAAAAGGCCATGGCAAGCTGGCATGAAAAAGAATTAAAAGCTGATTATGACACAACTAACTCTATGCCAGTTCTGAAAACACCATCTCCAATGGAAAAACAGGCTGCAGATCTATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCTACCAAAATTAACGACTCAGGAACCGTTGCCACTTATCGAGTAGCAAAATTTGGGGAAGACCATAAGGCACATGCTGTTAGTTTTAATTCATTTGAGATGAAAGCTAATTGCAGCTGTCAACTGTTTGAATACTCGGGAATAATTTGCAGGCATATATTAGCAGTTTTTAGGGCAAAAAATGTTCTTACACTTCCTTCCCAATACGTATTGAAACGGTGGACCAGAAATGCAAGAAATGGAGCTGCAATAGATGTCCATAATTCTGAATTACCAAATGAAGCTGGAGATTCTTCAACTGTTAGGTACAATAAGCTTCGTCAAGAAGCAATCAAGTATGTTGAGGAAGGAGCAAAGTCAATTCATATTTATAACGCATCTATGGATGCCCTAAAAGAGGCCTCTAGAAAGGTTGCAGCTGTGAAGAACCGGGGCCCTGGAGCTACTAATGGTGATATTATGGCCAATGGAGTTGTTGGGGCTTTGATTGCAACAGAAGAGGATCAGACAGCAACCTATCAATCTGTGGAACAGAAGGAGAAGAAAATTCGTGAGCTTTCTGCAGAGTTGGAAAGAACAAATCAACGTTGTGAAGTGTACAGAGCAAATCTCCTAGCTGTTCTAAGGGACATGGAAGAGCAGAAGTTGAAGTTATCTGTAAAGGTCCAAAATGCGAGGCTTGGTTTGAAAGAATGA 1650 41.21 MSGGRQRTLGVGVQHVLDHLKRMQAENPAFYYAVQGDGDQSGGNIFWADATSRMNYSYFGDTVVLDTTFRKNQYRVPLAAFTGFNHHGQPVLFGCALVLHESESSFIWLFQTWLQAMSGRQPISITTDPERLIQVAVVQVLPGTRHRFCKWAIFRETLEKLSHLCQSHPTFETEFRKCVNEAETIEEFESCWESLLNRYYIMDNDWLQLMYSARQQWVPVYMRDTFFGELSINESYKSLNLFFDGYVTASTTIQMLVRQYEKAMASWHEKELKADYDTTNSMPVLKTPSPMEKQAADLYSRRIFRKFQEELVETLANPATKINDSGTVATYRVAKFGEDHKAHAVSFNSFEMKANCSCQLFEYSGIICRHILAVFRAKNVLTLPSQYVLKRWTRNARNGAAIDVHNSELPNEAGDSSTVRYNKLRQEAIKYVEEGAKSIHIYNASMDALKEASRKVAAVKNRGPGATNGDIMANGVVGALIATEEDQTATYQSVEQKEKKIRELSAELERTNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLGLKE 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3464698 3468222 + CmoCh20G007020.1 Cmo20g00702 405019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00702 549 Pfam SWIM zinc finger 333 379 IPR007527 GO:0008270
Cmo20g00702 549 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 522 IPR031052 GO:0006355
Cmo20g00702 549 ProSiteProfiles Zinc finger SWIM-type profile. 331 379 IPR007527 GO:0008270
Cmo20g00702 549 Coils Coil 491 521 - -
Cmo20g00702 549 Pfam MULE transposase domain 63 154 IPR018289 -
Cmo20g00702 549 SMART 26again6 354 381 IPR006564 GO:0008270
Cmo20g00702 549 PANTHER PROTEIN FAR1-RELATED SEQUENCE 9 7 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00702 - - - csv:101214237 1038.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00702 Cmo-Chr20:3464698 Cmo16g00537 Cmo-Chr16:2608907 1.63E-101 dispersed
Cmo11g01806 Cmo-Chr11:12670409 Cmo20g00702 Cmo-Chr20:3464698 0 wgd
Cmo19g00838 Cmo-Chr19:8202638 Cmo20g00702 Cmo-Chr20:3464698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00702 Cmo_Chr20 FPKM 6.443137 6.213633 15.841278 12.980616 31.61598 19.911976 35.285099 9.814153 10.447577 15.115496