Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00704 ATGAGAAGAGCAACTTCAATGTTGAAGCTTGCTCCCCCTTGGCTTGTTCGGTTTTCTTCAGTATCGGCCTCCTCGTTAGTCGACGAGTTCACGAAATTTTGCTATCAGAGGGATCTTCCACGAGCCATGAAAGCGATGGAAGCGATGCAGAGAAACCGCCTCTGTGCTGATGCAATCACTTACTCCGAGCTTATCAAGTGCTGCCTTGTTCGTGGGGGTGTAGAACAAGGTCGGCTTGTTCATGAGCACGTTTTCTCAAATGGGTACGAACCCAAAACATTCTTGATCAATACTCTGCTTAACATGTATGTGAAATTTGGTCTATTGGATGAAGCCCTGAAGCTGTTCGACGAAATGCCTGACAGAAATGTTGTCTCATGGACGACTATGATATCTGCTTACTCCAATTCCAGTCTTAATCATATGGCTTTAGAGTTTCTTATATTGATGCTTAGGGAAGGCGTTCGACCTAATATGTTTACTTATTCTTCTGTTTTGAGAGCTTGCAATGGTTTGTTGAACCTCAGGCAGCTACATGGTAGTCTAATGAAGGTGGGGTTGGAATCTGATGTCTTTGTAAGGAGTGCTCTGATCGACACTTACTCGAAATTGGGTGAACAGCAAGATGCTTTGAATGTCTTTAACGAGATGGTTACAGGGGATTTGGTTGTTTGGAACTCCATTATTGGTGGTTTAGCTCAGAACAGTGATGGGGATGAAGCTTTACATCTTTATAAGAGAATGAAAAGAGCTGGTTTTGCAGCTGATCAATCTACATTAACTAGCGTCTTGCGAGCCTGCACTGGGCTAGCGCTCTTAGAATTGGGCAGACAAGTCCATGTCCATGTATTAAAGTTTGATCAAGATCTAATCCTAAACAACGCACTTCTTGACATGTATTGCAAATGCGGCAGTCTAGAAGATGCAAACCTTGTTTTCACAAGGACAATGGCAGATAAGGATGTCATCTCATGGAGCACCATGATTGCAGGGTTAGCTCAAAATGGCTTCAGTACAGACGCACTCAAATTGTTTGAATCAATGAAACTTAGAGGGCCAAAACCAAATTACATCACTGTTCTTGGGGTTCTTTTTGCTTGTAGTCATGCAGGGCTTGTCAAAGATGGATGGTACTATTTTCAATCTATGAAGGAGCTTTTCGGGATCGATCCTGGAAGAGAGCACTATGGTTGTATAATCGATCTTCTTGGACGAGCTGGGAAGCTTGATGAAGCTGTGAAGTTGATCCATGAAATGAAGCATGAACCAGATGCAGTAACATGGCGAATCTTGCTTGGTGCTTGCAGAGTCCACAAGAATGTGGATTTAGCCATATATGCTGCTAAAGAAATTCTGAAACTCGATCCTACCGACGCGGGGACGTATATATTGTTATCAAATATTTATGCGAATACTCAGAAATGGGAAGATGTTGCTGAAGTTAGGAGGAGCATGAGAGCCAGGGGAGTGAAGAAAGAACCAGGATGCAGCTGGATTGAAGTGAGCAAACAAGTACATGCCTTTATATTGGGGGACAACTCGCATCCAAGAATAGAAGACATAAAGAGGGAGATCAGCCGAGTAATCCAAAGATTAGTGTCAGTGGGCTATGTTCCTGATACAAATTTTGTGCTGCAGGATCTTGAGGGAGAACAGATGGAGGACTCCCTTCAATATCACAGCGAGAAACTGGCAATTGTGTTTGGTTTGATGAGTTTGCCAAAGGAGAAGACCATTCGAATTAGGAAAAACCTTAGAATCTGTGGGGACTGTCATCTCTTTGCAAAGCTTGTCGCGCAGTTGGAGAATCGAGTCATCGTCATTCGAGATCCCATCAGGTACCATCATTTTCAGGAAGGTTTATGCTCTTGTGGTGATTACTGGTGA 1887 43.24 MRRATSMLKLAPPWLVRFSSVSASSLVDEFTKFCYQRDLPRAMKAMEAMQRNRLCADAITYSELIKCCLVRGGVEQGRLVHEHVFSNGYEPKTFLINTLLNMYVKFGLLDEALKLFDEMPDRNVVSWTTMISAYSNSSLNHMALEFLILMLREGVRPNMFTYSSVLRACNGLLNLRQLHGSLMKVGLESDVFVRSALIDTYSKLGEQQDALNVFNEMVTGDLVVWNSIIGGLAQNSDGDEALHLYKRMKRAGFAADQSTLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALLDMYCKCGSLEDANLVFTRTMADKDVISWSTMIAGLAQNGFSTDALKLFESMKLRGPKPNYITVLGVLFACSHAGLVKDGWYYFQSMKELFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMKHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPTDAGTYILLSNIYANTQKWEDVAEVRRSMRARGVKKEPGCSWIEVSKQVHAFILGDNSHPRIEDIKREISRVIQRLVSVGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPKEKTIRIRKNLRICGDCHLFAKLVAQLENRVIVIRDPIRYHHFQEGLCSCGDYW 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3481994 3483880 - CmoCh20G007040.1 Cmo20g00704 405021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00704 628 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Cmo20g00704 628 TIGRFAM PPR: pentatricopeptide repeat domain 396 421 IPR002885 -
Cmo20g00704 628 TIGRFAM PPR: pentatricopeptide repeat domain 96 124 IPR002885 -
Cmo20g00704 628 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Cmo20g00704 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Cmo20g00704 628 PANTHER OS01G0913400 PROTEIN-RELATED 20 571 - -
Cmo20g00704 628 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 20 571 - -
Cmo20g00704 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Cmo20g00704 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cmo20g00704 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cmo20g00704 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 422 IPR002885 -
Cmo20g00704 628 Gene3D Tetratricopeptide repeat domain 174 274 IPR011990 GO:0005515
Cmo20g00704 628 SUPERFAMILY TPR-like 407 478 IPR011990 GO:0005515
Cmo20g00704 628 SUPERFAMILY TPR-like 99 479 IPR011990 GO:0005515
Cmo20g00704 628 Pfam PPR repeat 195 218 IPR002885 -
Cmo20g00704 628 Pfam PPR repeat 294 313 IPR002885 -
Cmo20g00704 628 Pfam PPR repeat 388 420 IPR002885 -
Cmo20g00704 628 Pfam E motif 438 500 IPR046848 -
Cmo20g00704 628 Gene3D Tetratricopeptide repeat domain 292 515 IPR011990 GO:0005515
Cmo20g00704 628 Gene3D Tetratricopeptide repeat domain 26 173 IPR011990 GO:0005515
Cmo20g00704 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Cmo20g00704 628 Pfam PPR repeat family 122 169 IPR002885 -
Cmo20g00704 628 Pfam PPR repeat family 320 366 IPR002885 -
Cmo20g00704 628 Pfam PPR repeat family 221 267 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00704 - - - csv:101213511 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00704 Cmo-Chr20:3481994 Cmo18g01256 Cmo-Chr18:12305510 2.39E-49 dispersed
Cmo20g00704 Cmo-Chr20:3481994 Cmo06g00073 Cmo-Chr6:453994 7.03E-31 transposed
Cmo20g00704 Cmo-Chr20:3481994 Cmo14g00772 Cmo-Chr14:3921926 3.11E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g309 . . . . . . . . . . . . . Car20g00609 . . . . . . . . . . . . . . . . . . . Cone3ag1256 . . . . . . . . . . . . . . . Cmo20g00704 . . . . Cpe16g00356 . . . . . . . . Cla02g01056 . . . . . . . . . Cme11g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003057 1 1 0 0 1 1 2 0 1 2 2 0 1 2 2 2 0 2 1 1 1 1 1 1 1 2 2 0 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00704 Cmo_Chr20 FPKM 14.42512 18.183594 36.19112 39.983883 119.03344 108.367165 117.35347 40.108459 37.376625 40.371361