Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00713 ATGGATTCTCCTTCCCATTCTCTGTTTCCCTTCACCGTTTTCCCCCCTCCCTCTCCCTCCCATTCTTCCCTTCCGCCCCCCAATTCCCGCCGGAAGCGTACTAAGTTCATCAAACCCACCGCCGCCCCTCTTCATTCTCCCTCCACTCCCAAGTCCAAGCACGCCAAGAAACCGGACCCGACCGCTCCCAAGATCACTCGCCCCTGTACTGAGTGCGGCAAGACGTTCTGGTCATGGAAGGCTCTGTTCGGCCACATGCGCTGCCATCCTGAGCGTCAATGGCGAGGAATCAATCCGCCGCCGAATTTCCGCCGATCGACTGCCACTGACGAAGATCACGAAATCGCTGCCTGTTTGATTATGCTAGCGAATGGCCCTAATGCGATCGATCCAACTGAAGCGGTTACTGAAACGGACGGTGATTGTCGAGAAAATCAAGAATTGACGGCGTTAGTGTTTGAACAGATAGGCAGCCGGAAGAACGTGAAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATCATGGTTATTTGGACTTGAATTTGCCTCCTCCAATGGAAGACATTGAAGAACGTTCATCATCCTATTGTTCAGGGATTGTTTTGGATCTGAGATTAGGGCCTAATTAA 636 50.94 MDSPSHSLFPFTVFPPPSPSHSSLPPPNSRRKRTKFIKPTAAPLHSPSTPKSKHAKKPDPTAPKITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRRSTATDEDHEIAACLIMLANGPNAIDPTEAVTETDGDCRENQELTALVFEQIGSRKNVKEEEEEEEDDDDDDHGYLDLNLPPPMEDIEERSSSYCSGIVLDLRLGPN 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3507341 3507976 - CmoCh20G007130.1 Cmo20g00713 405030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00713 211 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 163 209 - -
Cmo20g00713 211 MobiDBLite consensus disorder prediction 158 196 - -
Cmo20g00713 211 SUPERFAMILY beta-beta-alpha zinc fingers 68 92 IPR036236 -
Cmo20g00713 211 MobiDBLite consensus disorder prediction 1 63 - -
Cmo20g00713 211 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 23 154 - -
Cmo20g00713 211 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 163 209 - -
Cmo20g00713 211 Pfam C2H2-type zinc finger 68 91 - -
Cmo20g00713 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Cmo20g00713 211 MobiDBLite consensus disorder prediction 10 24 - -
Cmo20g00713 211 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Cmo20g00713 211 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 23 154 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo19g00814 Cmo20g00713 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00151 Cmo-Chr6:812489 Cmo20g00713 Cmo-Chr20:3507341 3.24E-11 dispersed
Cmo16g01334 Cmo-Chr16:9426116 Cmo20g00713 Cmo-Chr20:3507341 2.32E-11 dispersed
Cmo20g00713 Cmo-Chr20:3507341 Cmo10g00234 Cmo-Chr10:1050303 6.92E-08 dispersed
Cmo19g00814 Cmo-Chr19:8047935 Cmo20g00713 Cmo-Chr20:3507341 5.11E-34 wgd
Cmo20g00713 Cmo-Chr20:3507341 Cmo03g00654 Cmo-Chr3:5914106 3.76E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11757 PF13912 zf-C2H2_6 4.30E-08 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00713 - - cmax:111484009 357.836