Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00717 ATGCCCAGGCCGGGTGAGGGAGACCTGCGGCCGGTCACGCTCATTCCTGGAGACGGAATCGGTCCTCTGGTGACTAATGCGGTCGAGCAAGTGATGGAGGCGATGCACGCTCCTGTATACTTCGAGCGTTACGAAGTCCATGGCGATATGAAGGAGGTTCCTCGAGAGGTAATGGAGTCTATTTTGAAGAATAAAGTGTGTTTGAAAGGCGGACTGATGACTCCGATGGGCGGCGGTGTTAGTTCACTCAATGTGCAACTCAGGAAGGAGCTCGACTTGTATGCCTCGCTTGTTAATTGTTTCAATTTCCCTGGATTGCCCACGCGACATGAGAATGTTGATATCGTCGTCATTAGGGAGAATACGGAGGGTGAGTACTCTGGCCTCGAGCATGAGGTCCTTCCTGGCGTTGTTGAGAGCCTCAAGGTAATTGTGATCACAAAGTTCTCCTCGGAACGCATTGCCAAATATGCGTTTGAGTATGCTTATCTGAACAACAGGAAGAAAGTGACGGCAGTGCACAAAGCCAACATTATGAAACTTTCAGATGGTTTGTTTTTGGAGTCTTGCAGGGAAGTGGCAACCGAATATCCTAGTATCGAATACAAGGAGGTTATTGTCGACAACTGTTGCATGCAGCTTGTTTCAAAACCTGAGCAATTTGATGTAATGGTGACTCCCAACCTTTACGGCAATCTAGTAGCAAACACTGCAGCTGGTATTGCCGGAGGCACTGGTCTTATGCCAGGAGGGAACGTGGGGTTTGAGCATGCGATATTTGAACAAGGAGCGTCAGCAGGGAACGTGGGGAATGAGAAAATTGTGGAAGAGAAGAAGGCGAACCCAGTGGCTTTGCTACTGTCATCGGCCATGATGCTGAGGCACCTTCAGTTTCCTTCTTTCGCTGATAGACTTGAAAATGCTGTGAAACGTGTGATCTTGGAGGGCAATTGCAGGACCAAGGATCTTGGTGGAAACTGCACTACCCAACGGCTTGTCGATGCTGTCATTGCCTACGTGGAGTGA 1026 49.22 MPRPGEGDLRPVTLIPGDGIGPLVTNAVEQVMEAMHAPVYFERYEVHGDMKEVPREVMESILKNKVCLKGGLMTPMGGGVSSLNVQLRKELDLYASLVNCFNFPGLPTRHENVDIVVIRENTEGEYSGLEHEVLPGVVESLKVIVITKFSSERIAKYAFEYAYLNNRKKVTAVHKANIMKLSDGLFLESCREVATEYPSIEYKEVIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGLMPGGNVGFEHAIFEQGASAGNVGNEKIVEEKKANPVALLLSSAMMLRHLQFPSFADRLENAVKRVILEGNCRTKDLGGNCTTQRLVDAVIAYVE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3528783 3532315 - CmoCh20G007170.1 Cmo20g00717 405034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00717 341 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 10 339 - -
Cmo20g00717 341 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 1, MITOCHONDRIAL-LIKE 6 339 - -
Cmo20g00717 341 Gene3D Isopropylmalate Dehydrogenase 5 339 - -
Cmo20g00717 341 SMART Iso_dh_2 11 336 IPR024084 -
Cmo20g00717 341 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 6 339 - -
Cmo20g00717 341 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 10 338 IPR004434 GO:0006099
Cmo20g00717 341 Pfam Isocitrate/isopropylmalate dehydrogenase 12 336 IPR024084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00717 K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] - csv:101213909 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00383 Cmo-Chr7:1762431 Cmo20g00717 Cmo-Chr20:3528783 0 dispersed
Cmo07g00946 Cmo-Chr7:4545179 Cmo20g00717 Cmo-Chr20:3528783 1.81E-110 dispersed
Cmo02g00290 Cmo-Chr2:1440102 Cmo20g00717 Cmo-Chr20:3528783 0 wgd
Cmo20g00717 Cmo-Chr20:3528783 Cmo03g00656 Cmo-Chr3:5924066 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g229 . . . . . . . . . . . Cma20g00719 . Car20g00620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00717 . . . . Cpe16g00346 Cpe05g01341 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001945 2 2 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00717 Cmo_Chr20 FPKM 11.017344 11.375493 10.775592 11.78567 11.158612 10.305108 10.602293 2.994544 2.955919 3.236457