Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00718 ATGGCTTTAAACCTTCGCCAGAAGCAAACAGAATGTATAATTCGAATGTTGAATTTAAACCAGCCGGTGAACTCAACATCGACCGGGAACGAAGAAGAGGTTTACAAGATGTTGATCTTCGATAGATTTTGCCAGAATGTACTATCCCCTTTGATTCATGTTAAAGACCTTCGAAAACATGGGATCACGCTTTATTTTCTCATCGACAAGGATCGAAAACCTGTTCACGATGTTCCCGCAGTCTATTTCGTCCAACCGAGTAAGAACAACATAGATAGAATTGTTGCTGATGCTTCTCGTTTCCTCTATGATAATTTTTACTTGAACTTCTCTTCTTCTATTCCTCGTCCTCTTCTTGAGGATCTCGCATCTGGTACGCTGAATTCGGATTCGGTACAACGAATCTCGAAGGTGCACGACCTGTATTTGGAGTTCATTACATTGGAAGATAATTTGTTTTCGTTAGCACAGAAGAATATATATGTCCAATTGAACGATCCCTCTGCTGGCGATCGTGAAATTGAGGAGATTATAGAGAGAATCGTGAGTGGATTATTCAGTGTTTTGGCTACGCTTGCTGTTGTGCCTGTTATTCGATGCCAACGAGGAGGGCCGGCGGAAATGGTTGCCTCAGCATTGGATCAGAGGTTGAGAGATCATTTGTTGTCGAAGAACAACTTGTTTACAGAAGGTGGGGGCTTCGCTAGCTCCTTCCAGCGTCCGATTCTGTGTCTGTTTGATCGAAATTTTGAGTTATCTGTAGGAATACAGCATGATTTTAGGTACAGACCTTTAGTTCATGATGTTCTAGGATTGAAGCTGAATAGACTGAGTGTGCAGGGTGAAAAGGGTGGGATGAAATCATATGAATTAGATAGTTCAGACCCATTTTGGGTAGCCAATGGGTCTTTAGAATTTCCAGAAGTTGCAGTGGAGATCGAAACTCAGTTGAATAAGTATAAGAAAGGTGTTGATGAGGTGAATAGAAGAACTGGTGGGACTGATGGAGCTGAGTTTAATGGAACAGATTTGATTGGGAACACAAAGCATTTGATGAATGCTGTAAACTCATTGCCAGAATTGACTGAAAGGAAGCAAATTATTGATAAGCATACAAACATTGCTACCGTATTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCATATGCTAAGAAGGAGAATGATATGATGTCCCGAGGAGGTATCGATCGGAACGAGCTCGTGAGTGCGCTCAAAGGGAAGGGTACTAAGACGGATAAGCTTCGATTTGCTGTTATATATCTCATCTCTTCTGAAAGTATAAACCAATCTGAAGTGGAAGCTGTGGAAGCTGCCCTGAGGGAATCGGAAGTTGATATTAGTGCATTTCAGTATGTCAAGAAGATCAAGTCATTGAATGTTGCATTCACATCAGCAAATTCAGCTAGCAGAAGCAACATTGTGGATTGGGCTGAGAAACTCTATGGACAGTCGATTAGTGCAATGACTGCTGGTGTTAAAAATCTTTTGTCTAGTGATAGGCAGCTTGCACTGACTCGGACGGTAGAGGGGTTGATGGAAGGAAAACCGAATCCCGAAATCGATACTTTTCTTACGTTCGATCCACGTGCGCCGAAGTCAAGTTCTGGAACGAGTACCAGCCATTTGAAAGGACCATTCAAGGAAGCTATTGTGTTCATGATTGGAGGGGGTAACTACGTCGAGTACGGGAGCTTGCAAGAGCTGGCAACGAATCAGCAGCCCGTCAAGCATATAATATATGGTAGCACTGAAATCCTCACTGGAGTCGAGTTCGTCGAGCAGCTTTCGTTGTTGGGGCAGAAGATGGGACTTGGCAACGTTACTGCTACTGCTCCTCCTCCTCCAGGTCGTTAA 1878 43.18 MALNLRQKQTECIIRMLNLNQPVNSTSTGNEEEVYKMLIFDRFCQNVLSPLIHVKDLRKHGITLYFLIDKDRKPVHDVPAVYFVQPSKNNIDRIVADASRFLYDNFYLNFSSSIPRPLLEDLASGTLNSDSVQRISKVHDLYLEFITLEDNLFSLAQKNIYVQLNDPSAGDREIEEIIERIVSGLFSVLATLAVVPVIRCQRGGPAEMVASALDQRLRDHLLSKNNLFTEGGGFASSFQRPILCLFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSYELDSSDPFWVANGSLEFPEVAVEIETQLNKYKKGVDEVNRRTGGTDGAEFNGTDLIGNTKHLMNAVNSLPELTERKQIIDKHTNIATVLLGEIKERSLDSYAKKENDMMSRGGIDRNELVSALKGKGTKTDKLRFAVIYLISSESINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVAFTSANSASRSNIVDWAEKLYGQSISAMTAGVKNLLSSDRQLALTRTVEGLMEGKPNPEIDTFLTFDPRAPKSSSGTSTSHLKGPFKEAIVFMIGGGNYVEYGSLQELATNQQPVKHIIYGSTEILTGVEFVEQLSLLGQKMGLGNVTATAPPPPGR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3533427 3536584 - CmoCh20G007180.1 Cmo20g00718 405035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00718 625 PIRSF VPS45_Sec1 3 614 IPR001619 GO:0016192
Cmo20g00718 625 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 609 IPR036045 -
Cmo20g00718 625 PANTHER SEC1 FAMILY TRANSPORT PROTEIN SLY1-LIKE 3 611 - -
Cmo20g00718 625 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 259 503 IPR043127 -
Cmo20g00718 625 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 611 IPR001619 GO:0016192
Cmo20g00718 625 Pfam Sec1 family 36 602 IPR001619 GO:0016192
Cmo20g00718 625 Gene3D - 385 510 - -
Cmo20g00718 625 Gene3D - 148 605 IPR027482 -
Cmo20g00718 625 Coils Coil 310 330 - -
Cmo20g00718 625 Gene3D - 3 137 IPR043154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00718 K19998 SCFD1, SLY1; sec1 family domain-containing protein 1 - csv:116403874 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01511 Cmo-Chr15:10259982 Cmo20g00718 Cmo-Chr20:3533427 1.22E-18 dispersed
Cmo11g01780 Cmo-Chr11:12526372 Cmo20g00718 Cmo-Chr20:3533427 0 wgd
Cmo02g00289 Cmo-Chr2:1436362 Cmo20g00718 Cmo-Chr20:3533427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00718 Cmo_Chr20 FPKM 30.483562 28.817497 24.021021 25.730635 13.822388 13.998802 16.850199 41.866734 42.319115 47.936008