Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00729 ATGGATTTCTCTCTTAAGGCATTCAAATCCCACGGCTCTTATAAGTATGTGAGGAAGCTTTCTGGAACAGATTCTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAATAATCTTCACCAGAAACAGTCGTTTATGGCGGTGTCCGATGCATCTGACCGGAAGGAGGTCATTGTCAAGGTCGATGAAGCCGATGCTTCGAGTAATGCATCTGCGAGAGCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTAGACGGAATAATGGTGAAGGTAGTAATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCATCCAAGCTTATTGGACAGTTTCTGCATAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCCTACTGTGGCGGAATCTCCGATGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCACCCGCCGCTGCGTGACCATCGACCGCATGGCAATGGTCATGATGACGGTGCTGCTGAGGTTGTGAGTTGCACATCTAATTCATCGTTCGAGAGGAATGTATCGTTCCAGCGGAAATCTAGCTTGCTCAAGACTAAAACTAAGTCCAGATTACTGGACCCGCCCGAACACCAGGACAGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGACGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTACAAGAAGGCCAATCTCGGTGTTCTGACTATGTTACAATGGGCGAGTTTGATTCTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTTGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCTTCATCGAGAGAAGCTTTCTGCTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTGAAGAGCGATGCCCTTGAATATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAACAAGGAAGAAGAAGTGAAGCTTGCAGAAGAGGTTATTAAGTTACAGAACGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTTTCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGCGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATAAAGGATTCAGCTCATGAGGATGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCTAAGAGGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCACTAGCTTTGACACTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAGCTTGTACTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGATGTGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACCGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACTAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGTGACGCCGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATACTAAGTTACATTGAAGGCAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGGATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTTGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA 2817 44.87 MDFSLKAFKSHGSYKYVRKLSGTDSTQDQEQLPILSDQEPNNLHQKQSFMAVSDASDRKEVIVKVDEADASSNASARAVESVNSSGRIWRESSYDFWNDSDSRRNNGEGSNGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPQDKTLPTVAESPMRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQHPPLRDHRPHGNGHDDGAAEVVSCTSNSSFERNVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKNKEEEVKLAEEVIKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKRIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILSYIEGKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3614226 3618248 + CmoCh20G007290.1 Cmo20g00729 405046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00729 938 MobiDBLite consensus disorder prediction 99 134 - -
Cmo20g00729 938 Gene3D - 762 811 IPR023408 -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 263 280 - -
Cmo20g00729 938 PIRSF Memb_At2g17000 44 938 IPR016688 -
Cmo20g00729 938 Pfam Mechanosensitive ion channel 704 906 IPR006685 GO:0016020|GO:0055085
Cmo20g00729 938 MobiDBLite consensus disorder prediction 261 284 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 177 936 IPR016688 -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 170 IPR016688 -
Cmo20g00729 938 SUPERFAMILY Sm-like ribonucleoproteins 752 811 IPR010920 -
Cmo20g00729 938 Coils Coil 493 513 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 177 936 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 163 234 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 114 133 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 20 45 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 193 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00074 Cmo-Chr17:385654 Cmo20g00729 Cmo-Chr20:3614226 2.13E-176 dispersed
Cmo09g00080 Cmo-Chr9:370101 Cmo20g00729 Cmo-Chr20:3614226 0 transposed
Cmo11g01757 Cmo-Chr11:12373775 Cmo20g00729 Cmo-Chr20:3614226 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00729 K22048 - csv:101210264 1524.22