Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00729 | ATGGATTTCTCTCTTAAGGCATTCAAATCCCACGGCTCTTATAAGTATGTGAGGAAGCTTTCTGGAACAGATTCTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAATAATCTTCACCAGAAACAGTCGTTTATGGCGGTGTCCGATGCATCTGACCGGAAGGAGGTCATTGTCAAGGTCGATGAAGCCGATGCTTCGAGTAATGCATCTGCGAGAGCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTAGACGGAATAATGGTGAAGGTAGTAATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCATCCAAGCTTATTGGACAGTTTCTGCATAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCCTACTGTGGCGGAATCTCCGATGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCACCCGCCGCTGCGTGACCATCGACCGCATGGCAATGGTCATGATGACGGTGCTGCTGAGGTTGTGAGTTGCACATCTAATTCATCGTTCGAGAGGAATGTATCGTTCCAGCGGAAATCTAGCTTGCTCAAGACTAAAACTAAGTCCAGATTACTGGACCCGCCCGAACACCAGGACAGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGACGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTACAAGAAGGCCAATCTCGGTGTTCTGACTATGTTACAATGGGCGAGTTTGATTCTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTTGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCTTCATCGAGAGAAGCTTTCTGCTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTGAAGAGCGATGCCCTTGAATATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAACAAGGAAGAAGAAGTGAAGCTTGCAGAAGAGGTTATTAAGTTACAGAACGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTTTCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGCGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATAAAGGATTCAGCTCATGAGGATGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCTAAGAGGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCACTAGCTTTGACACTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAGCTTGTACTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGATGTGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACCGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACTAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGTGACGCCGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATACTAAGTTACATTGAAGGCAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGGATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTTGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA | 2817 | 44.87 | MDFSLKAFKSHGSYKYVRKLSGTDSTQDQEQLPILSDQEPNNLHQKQSFMAVSDASDRKEVIVKVDEADASSNASARAVESVNSSGRIWRESSYDFWNDSDSRRNNGEGSNGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPQDKTLPTVAESPMRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQHPPLRDHRPHGNGHDDGAAEVVSCTSNSSFERNVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKNKEEEVKLAEEVIKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKRIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILSYIEGKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS | 938 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3614226 | 3618248 | + | CmoCh20G007290.1 | Cmo20g00729 | 405046 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 99 | 134 | - | - | |
Cmo20g00729 | 938 | Gene3D | - | 762 | 811 | IPR023408 | - | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 263 | 280 | - | - | |
Cmo20g00729 | 938 | PIRSF | Memb_At2g17000 | 44 | 938 | IPR016688 | - | |
Cmo20g00729 | 938 | Pfam | Mechanosensitive ion channel | 704 | 906 | IPR006685 | GO:0016020|GO:0055085 | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 261 | 284 | - | - | |
Cmo20g00729 | 938 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 177 | 936 | IPR016688 | - | |
Cmo20g00729 | 938 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 5 | 170 | IPR016688 | - | |
Cmo20g00729 | 938 | SUPERFAMILY | Sm-like ribonucleoproteins | 752 | 811 | IPR010920 | - | |
Cmo20g00729 | 938 | Coils | Coil | 493 | 513 | - | - | |
Cmo20g00729 | 938 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 177 | 936 | - | - | |
Cmo20g00729 | 938 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 5 | 170 | - | - | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 163 | 234 | - | - | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 114 | 133 | - | - | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 20 | 45 | - | - | |
Cmo20g00729 | 938 | MobiDBLite | consensus disorder prediction | 193 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo17g00074 | Cmo-Chr17:385654 | Cmo20g00729 | Cmo-Chr20:3614226 | 2.13E-176 | dispersed | |
Cmo09g00080 | Cmo-Chr9:370101 | Cmo20g00729 | Cmo-Chr20:3614226 | 0 | transposed | |
Cmo11g01757 | Cmo-Chr11:12373775 | Cmo20g00729 | Cmo-Chr20:3614226 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00729 | K22048 | - | csv:101210264 | 1524.22 |