Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00729 ATGGATTTCTCTCTTAAGGCATTCAAATCCCACGGCTCTTATAAGTATGTGAGGAAGCTTTCTGGAACAGATTCTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAATAATCTTCACCAGAAACAGTCGTTTATGGCGGTGTCCGATGCATCTGACCGGAAGGAGGTCATTGTCAAGGTCGATGAAGCCGATGCTTCGAGTAATGCATCTGCGAGAGCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTAGACGGAATAATGGTGAAGGTAGTAATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCATCCAAGCTTATTGGACAGTTTCTGCATAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCCTACTGTGGCGGAATCTCCGATGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCACCCGCCGCTGCGTGACCATCGACCGCATGGCAATGGTCATGATGACGGTGCTGCTGAGGTTGTGAGTTGCACATCTAATTCATCGTTCGAGAGGAATGTATCGTTCCAGCGGAAATCTAGCTTGCTCAAGACTAAAACTAAGTCCAGATTACTGGACCCGCCCGAACACCAGGACAGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGACGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTACAAGAAGGCCAATCTCGGTGTTCTGACTATGTTACAATGGGCGAGTTTGATTCTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTTGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCTTCATCGAGAGAAGCTTTCTGCTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTGAAGAGCGATGCCCTTGAATATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAACAAGGAAGAAGAAGTGAAGCTTGCAGAAGAGGTTATTAAGTTACAGAACGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTTTCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGCGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATAAAGGATTCAGCTCATGAGGATGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCTAAGAGGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCACTAGCTTTGACACTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAGCTTGTACTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGATGTGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACCGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACTAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGTGACGCCGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATACTAAGTTACATTGAAGGCAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGGATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTTGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA 2817 44.87 MDFSLKAFKSHGSYKYVRKLSGTDSTQDQEQLPILSDQEPNNLHQKQSFMAVSDASDRKEVIVKVDEADASSNASARAVESVNSSGRIWRESSYDFWNDSDSRRNNGEGSNGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPQDKTLPTVAESPMRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQHPPLRDHRPHGNGHDDGAAEVVSCTSNSSFERNVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKNKEEEVKLAEEVIKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKRIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILSYIEGKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3614226 3618248 + CmoCh20G007290.1 Cmo20g00729 405046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00729 938 MobiDBLite consensus disorder prediction 99 134 - -
Cmo20g00729 938 Gene3D - 762 811 IPR023408 -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 263 280 - -
Cmo20g00729 938 PIRSF Memb_At2g17000 44 938 IPR016688 -
Cmo20g00729 938 Pfam Mechanosensitive ion channel 704 906 IPR006685 GO:0016020|GO:0055085
Cmo20g00729 938 MobiDBLite consensus disorder prediction 261 284 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 177 936 IPR016688 -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 170 IPR016688 -
Cmo20g00729 938 SUPERFAMILY Sm-like ribonucleoproteins 752 811 IPR010920 -
Cmo20g00729 938 Coils Coil 493 513 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 177 936 - -
Cmo20g00729 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 163 234 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 114 133 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 20 45 - -
Cmo20g00729 938 MobiDBLite consensus disorder prediction 193 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00729 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1524.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00074 Cmo-Chr17:385654 Cmo20g00729 Cmo-Chr20:3614226 2.13E-176 dispersed
Cmo09g00080 Cmo-Chr9:370101 Cmo20g00729 Cmo-Chr20:3614226 0 transposed
Cmo11g01757 Cmo-Chr11:12373775 Cmo20g00729 Cmo-Chr20:3614226 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00881 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.9e-133 471.9
Cmo16g00807 . 24 726 Mechanosensitive Ion Channel Family AT5G10490 56.4 9.3e-198 687.6
Cmo12g00153 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-192 669.5
Cmo05g00572 . 10 706 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.4e-190 663.7
Cmo05g00572 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 57.1 9.1e-201 697.6
Cmo12g00153 . 10 651 Mechanosensitive Ion Channel Family AT1G58200 55.5 2.1e-189 659.8
Cmo16g00807 . 6 695 Mechanosensitive Ion Channel Family AT1G58200 51.8 2.7e-176 616.3
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.7e-263 906.4
Cmo20g00729 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-246 849.0
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 59.0 2.2e-284 975.7
Cmo20g00729 . 252 933 Mechanosensitive Ion Channel Family AT2G17000 61.0 3.8e-233 805.4
Cmo11g01757 . 270 793 Mechanosensitive Ion Channel Family AT2G17000 53.8 1.2e-141 501.5
Cmo01g01806 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.4 1.4e-173 607.4
Cmo10g00779 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.3 1.7e-200 696.8
Cmo01g01806 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.4 1.5e-188 657.1
Cmo11g00734 CST 59 752 Mechanosensitive Ion Channel Family AT5G12080 51.0 1.7e-184 643.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00729 Cmo_Chr20 FPKM 15.507456 16.204435 31.770674 32.212368 42.567142 44.543129 41.895153 5.450141 6.953184 6.916352