Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00731 ATGGAGAAGATGATGAGTTTAAACCATCTGTTCGTGACGACGTTCATCGGAAGCTTGTCGATGTTCATGGTCATTCCGACCATTGTTGACTTAACAATGGAGTTTGTGTGTCCTCACCAGGATCACTGTTCCATCGCCATTTATCTCTCTGGTGTCCAGCAGGCGATTGTAGGGCTTGGAGCAGTGGTGATAACACCAGTAATTGGGAATCTATCAGACAGATACGGAAGGAAAGCAATGCTGACTATCCCAATGACGTTTTCAATCATACCGCTCGCCATAATGGGTTATAGAAGAACTACCAACTTCTTCTATGCATTTTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACTACAGTTTCACTTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGATCAGAGGATCTCGGCGTTCGGAATCCTATCTGGGGTCAGATCTGTAGGTTATGTGTGTGGAACCTTTTTGGCTCGGCTCCTTTCAACTGCTACAGTGTTTCAGGTGGCTGCTTTCATGTCAGTGCTTGCGGTAGTGCACATGAGGACTTTTCTCAAGGAAAGTATTCCAGATCAGAATGAGTTGACTCAACCGATCTTCGACGAAAACTTAAGTGGTGGTGATGATGAAAATGGACCAGAATTGCCTACAAGAACTCAGTTATCGATAGGGATGTCTTCTATAAGAGACGTTATCTCCTTAATCACGAGTAGCACAACATTTTCACAAGCAGCAAGAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTAGCGTATTTCTTAAAGGCCCGTTTTCACTTCGACAAAAACCAGTTTGCTGACTTGATGATAATTGAGGGGGTTGCCGGGGCCGTTTCACTGTTTCTTTTGATGCCCGCTTTGGCACTAGCTATAAGACAGGAGAGGTTGCTATCAATAGGGCTGTGGGCGAGCATTATAAATGTTCCTTATGCTTTAAGAGCATTTACAATTTTTACAATTCTGGTCAGTCCAATAATATTCAACATTGCATCGAGTCAAGTTGGACCGAGTGAGCAGGGGAAGGCCCAAGGATACATCTCAGGCATTAATTCCCTTGCGAACATTGCTTCTCCATTACTTTTCAGTCCCTTGATAGCTCTTTTCCTCTCCAAGGATGCACCATTTGACTTCCCCGGCTTCGGTATTTTGTGCATTGGGCTCGCTTCGTTGATTGGCTTCACTCTAAGCCTGATGATCCGTGTAGACCCGTTCATTTTCATTCAGAAAATCAAAAACTTAGTATACTGTGAATTTGAAGCAACACAGAGACAACAGATACTCAAACTCAAAGCAACTACAGCAGAAAATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGTTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGAAAGCTTGTAAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTATCGCATATGCTTGTCTTCTTGAGCTTCTTTATAAGTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATGCTACAAGACAAGAGCGACGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTAATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACTGGTTGCTTTGTCGCCAAAGGAAAAGCGGTAAAGAATTGGGTATGTTTGAGGTGA 2766 43.71 MEKMMSLNHLFVTTFIGSLSMFMVIPTIVDLTMEFVCPHQDHCSIAIYLSGVQQAIVGLGAVVITPVIGNLSDRYGRKAMLTIPMTFSIIPLAIMGYRRTTNFFYAFYIMKTLTDMVSEGTTVSLALAYVADKTSEDQRISAFGILSGVRSVGYVCGTFLARLLSTATVFQVAAFMSVLAVVHMRTFLKESIPDQNELTQPIFDENLSGGDDENGPELPTRTQLSIGMSSIRDVISLITSSTTFSQAARVSFFNSLAEKGMQASLAYFLKARFHFDKNQFADLMIIEGVAGAVSLFLLMPALALAIRQERLLSIGLWASIINVPYALRAFTIFTILVSPIIFNIASSQVGPSEQGKAQGYISGINSLANIASPLLFSPLIALFLSKDAPFDFPGFGILCIGLASLIGFTLSLMIRVDPFIFIQKIKNLVYCEFEATQRQQILKLKATTAENAIYFWRLMELRFCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGIAYACLLELLYKSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSMLQDKSDDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNWVCLR 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3623481 3630422 - CmoCh20G007310.1 Cmo20g00731 405048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00731 921 ProSiteProfiles Smr domain profile. 828 912 IPR002625 -
Cmo20g00731 921 PANTHER ATPASE EXPRESSION PROTEIN 3 497 919 - -
Cmo20g00731 921 SMART SMR_2 825 912 IPR002625 -
Cmo20g00731 921 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Cmo20g00731 921 Gene3D MFS general substrate transporter like domains 5 411 IPR036259 -
Cmo20g00731 921 Gene3D - 827 910 IPR036063 -
Cmo20g00731 921 PRINTS Tetracycline resistance protein signature 357 380 IPR001958 GO:0022857
Cmo20g00731 921 PRINTS Tetracycline resistance protein signature 143 165 IPR001958 GO:0022857
Cmo20g00731 921 PRINTS Tetracycline resistance protein signature 50 69 IPR001958 GO:0022857
Cmo20g00731 921 Gene3D Tetratricopeptide repeat domain 552 786 IPR011990 GO:0005515
Cmo20g00731 921 SUPERFAMILY MFS general substrate transporter 10 413 IPR036259 -
Cmo20g00731 921 CDD MFS_SLC46_TetA_like 10 413 - -
Cmo20g00731 921 Pfam Major Facilitator Superfamily 10 373 IPR011701 GO:0022857|GO:0055085
Cmo20g00731 921 PANTHER OS02G0120000 PROTEIN 497 919 - -
Cmo20g00731 921 TIGRFAM PPR: pentatricopeptide repeat domain 660 691 IPR002885 -
Cmo20g00731 921 SUPERFAMILY SMR domain-like 825 910 IPR036063 -
Cmo20g00731 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Cmo20g00731 921 Pfam PPR repeat 696 723 IPR002885 -
Cmo20g00731 921 Pfam PPR repeat 660 689 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00731 - - - cpep:111776692 783.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00330 Cmo-Chr5:1457170 Cmo20g00731 Cmo-Chr20:3623481 2.80E-128 dispersed
Cmo20g00731 Cmo-Chr20:3623481 Cmo01g01356 Cmo-Chr1:10705925 2.91E-09 dispersed
Cmo19g00768 Cmo-Chr19:7764196 Cmo20g00731 Cmo-Chr20:3623481 6.34E-157 wgd
Cmo02g00272 Cmo-Chr2:1320079 Cmo20g00731 Cmo-Chr20:3623481 1.09E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g214 . Blo15g00393 Bda06g00469 . Bpe07g00705 . . Bma12g00911 . . . Cma20g00733 . Car20g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00731 . . . . Cpe16g00334 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00731 Cmo_Chr20 FPKM 7.311678 8.064849 8.180261 8.271332 8.033209 9.366133 9.499478 10.312268 9.262728 10.326117