Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00740 ATGGAGCAACAGGGTTCTGTGGACAAGGAATCTCTTATCGGTACTGGCAATAGTTATATGGATAGGGATGGTGTTTCTTCAAGTGAAAATGTCCACATGACAACTATAAATAATGATGAAACTAGAAAAACTAATGAGAATACAAGCGACAAACCTAGTATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGACATTACTGATGATGAAGATGAAGATGAAGATGAGGATGGTGGGGATGGTGAGGATGATGATGGTTGTGATGATGATGATGGTGATGGAGAGAAAGTAGGACAAAACAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATTCCAACAGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCCGAATGTTAATGACTTAACAGTTATAGATAGGGGATTCTTACATGGTGATTTTGTTGCTGCTGTTTCTGATCCAACCGGGCAAGCAGGTGTTGTGGTAGATGTAAATATCTCTGTTGATTTGCTGGTTCCTGATGGATCAATTATGAAAGATATATCATCTAAAGACTTGAAACGTGTGAGAGACTTCACTGTGGGGGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCCAAGTGTAAAGTCACAAAGGCAGAGCCAATGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAAGGCGAGTTCTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGTACTGTCACCAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTGAGATTACTGACTTGTTTCTCACATGCAAATTGGCAGTTGGGCGACTGGTGTCTTCTTCCCTCATCATTCTCCTCTGGCTTGACTAAGGAATCATCACGAACACATCGTTCTGATTCAGTGAACAACTCATTAGATTCCACACAACCGGAGGGTGTGTGTGATTCTGAGGATGTTGTGTTAAATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCCTTAGTGCATGTGATGGAAATTATAGGTATCCTGAATGTAATATTTTGCCTGAATCTAGTAATTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGTAAAGTTGTCATCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCCGGACAGAACGTGGACTGGATTCAACAACCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCGGAACAGTATGTGGTTGAGAAGGCCTCCGATAATGATGATGATATTAGTGAAAGCAGGCGGGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGCACAGCCTGTGTAATGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATACAAGAAATTGTTAGTGTGTATGAACTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTGATTCTATAGAATCGATGTCTTTGGGTAACGATACAGAGGAATTAAAGCAGCAAAGTTCAACAAATGAGATGATGAATTGTACAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCCTCATGTAGTGATGATTGCATTGACTTCTCAGATCTCTCCTGGGTTGGAAATATAACTGGTCTCAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATNGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTCGGTCGAGATGATGATGATGAATCTATTGCTGCTGGGAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGATGATGATGAAAGGGATTCTGTTGATAATGCTAAGGAGGATATCGAGCTGCAAGATCCTGGTGTGAATTCTGAAGAGGAAGGAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCGTTTGCTGCAATTCGATTTTTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGAATCAATGGATGTGGATTCCCACAGTGAAAGTGAAACTCAATCCTTGGAAATTCAAGCTTTAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAATTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGGAGAGGATAATATTGCTTCAGAGCCATCAGAAGTGTCGGAATCGGCAGACGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGGTTCAGCATGCCATGAGGATGGCACCTGCAGCTTCAAAGGGTTTGATATAGCTAAAGATCCTTTGGACCATTATTTCCTTGGTACAAATGGACAAACTAATAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAACAATTTGCCAGATGGGATATACGTTCGAGTCTACGAAGACCGTATGGACCTCTTAAGAGCAGTCATTGTTGGGGCTTACGGGACTCCGTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCCGACGTTCCACCATCAGCGTATTATCATTCAGGTGGGTGGCGTATAAATCCGAATCTTTACGAGGAAGGCAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGTAGAGGAAATGAAGTGTGGGATTCAAAGTCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCATACTTTAATGAAGCTGGATATGACAAGCAAATTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTGGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCGCTTACGGAAGATGCCTCTATAAGAGAGAACAGCGATCCCAACTCGACGTCGGTCGGCTTTAAGCTTATGCTTGCTAAGATCGTTCCAAAGCTCGTGTCATCGTTGAACGAAGTTGGAGCTGATTGTGATGATTTTAAGCATTTTCAACAGTTGTAG 3450 41.42 MEQQGSVDKESLIGTGNSYMDRDGVSSSENVHMTTINNDETRKTNENTSDKPSIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDEDEDGGDGEDDDGCDDDDGDGEKVGQNKENYGDDSNAKNSNRDNYKSQPLPDDEVRVLWMDESETTPNVNDLTVIDRGFLHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPMRLKPVSKNILEDANFPYYPGQRVKASSSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPSSFSSGLTKESSRTHRSDSVNNSLDSTQPEGVCDSEDVVLNELSGTTESTDLDSLSACDGNYRYPECNILPESSNSRALKETTHETWPLHRKKIRKVVIRRDKKARKKEENFERALLIINTKTKVDVAWQDGRTERGLDSTTLIPIDNPGDHEFVPEQYVVEKASDNDDDISESRRVGVVKSVHAKERTACVMWLKPVSRAEDPREFDIQEIVSVYELEGHPDYDYCYGDVVVRLSPVSDSIESMSLGNDTEELKQQSSTNEMMNCTEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGXVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDDDERDSVDNAKEDIELQDPGVNSEEEGSEQNNSGRNLALSVPFAAIRFFTRLAAGIFSRGPRNPESMDVDSHSESETQSLEIQALEEKDSGLHSSSLKSNSFDASDMNSDCGRGEDNIASEPSEVSESADASSNLRTAESDGSACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDSKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIRENSDPNSTSVGFKLMLAKIVPKLVSSLNEVGADCDDFKHFQQL 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3698271 3705276 + CmoCh20G007400.1 Cmo20g00740 405057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00740 1149 Gene3D Ubiquitin Conjugating Enzyme 867 1134 IPR016135 -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 378 399 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 784 812 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 840 859 - -
Cmo20g00740 1149 CDD UBCc 901 1051 IPR000608 -
Cmo20g00740 1149 SUPERFAMILY UBC-like 882 1065 IPR016135 -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 114 134 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 778 860 - -
Cmo20g00740 1149 Pfam Ubiquitin-conjugating enzyme 903 1047 IPR000608 -
Cmo20g00740 1149 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 41 1148 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 1 151 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 82 113 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 20 42 - -
Cmo20g00740 1149 SMART ubc_7 901 1058 - -
Cmo20g00740 1149 MobiDBLite consensus disorder prediction 701 753 - -
Cmo20g00740 1149 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 41 1148 - -
Cmo20g00740 1149 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 898 1058 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00740 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 1970.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00263 Cmo20g00740 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00856 Cmo-Chr9:4421597 Cmo20g00740 Cmo-Chr20:3698271 4.31E-89 dispersed
Cmo20g00740 Cmo-Chr20:3698271 Cmo14g02145 Cmo-Chr14:15451325 3.46E-09 dispersed
Cmo03g01259 Cmo-Chr3:9650451 Cmo20g00740 Cmo-Chr20:3698271 4.57E-57 transposed
Cmo02g00263 Cmo-Chr2:1258735 Cmo20g00740 Cmo-Chr20:3698271 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00740 Cmo_Chr20 FPKM 17.665937 19.350014 14.841528 13.6758 18.408331 22.218927 17.625368 4.146639 3.834015 3.903833