Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00743 ATGGCGGAGTCAAACAATGGAGCCCAATGTACTTCCATTATCAGACTGTACCAACAACCAAATCGGAGCCAAGGTTTTCAAATGGCTGGAAAAGGAAATGAACGTTTAGATTGTACACATGCTTCCAATCCTTACCATGTCTGCTTTGAACACTGTTCTGAAAAGAAAGGTGAAAGCAAGAAGCAGATAGCTAGAAAGTATTCAGGCGATGGTGCGATGAAGTATAGCGGCGAACGCAAAAAGACGGTTCGTTCAGATTGCACTAATGGATCGAATCCTTACCACAACTGTAATGAATTCTGCTCCAACATAACCACTCAATCTGGCAGGCCAAGGGCAGAAAGGGATTCAGGTTCAGGTGGAGCAACGAAGGATTCGAGGCCAAAATCACCCCGAAAACTCAATGTATCTTCGATGAGTGCCGTTTCGTCTAAACCTCAAGTAACTGAAGCCCGTGCCCTTCCTGAGGAAAATACAAATTTGAAGAATGGTGACTATATCAAGCCGTATGCTGAGGAAACTTGCTTTGTTGAAGACTCTTTGACGATTGAGGAAAAAAATAAGTTCTCCCACTTGATTCTAGTTTCTCCAAATGCCCTGAAGACTGATGCTTCCTCAATTACTTATGTGAAATCAAAAGAAGACATTAAGACAAGGCCTGATGAAATTTCTGAAATAGTGCAAGATCCATCAGTTCATGATGAGGAAGAAGGTGGCCATACAACTGCTTCACTCAATATCACTAGCTTCCCTTTCCCCGACATGGTTCGTAATCATATAAAATGGGACGAGGACGAGGTTAAATCTGTATTATCTGAGCCATCGGTACCCGTGGGGAAGTACTACGTTAAAGCAAGTTCTGCCCCCATTCTGCAATCAATCTTCAACAAGCATGGAGACATAGCAGCTTCGTGTAAACTGGAATCGTCATCGATCCGCTCTTATTATTTGGAGAGTGTGTGCTATATCATTCAAGAGTTGCAGCACACAAAATTCTCTCAGAAGGTGTCCAAGTCCAAAGTTAAAGAACTCTTAGCCATCATCAACGACTTGGTTTCTTCAGAAATGAACGTTGGTTGGTTGCATAGCATACTCAACGATGTTGCAGAAGCTGTTGAGTCCTCCAGCGGCCAACAATGGAGTCTGGAGGTGGCCAAGGCAAACTGTGACCACGAGTTGGAGCTGACCAAGAAAGAACTCGAATCTCGAGTCGAGGATTTAACACGAAAAGAAAAGGAAATGGGCAGTGCGAAGGCGAAAGTCGTCGACACCAGAGCTCGGTTGAGTGAACTCGAGCTCAAATATGGTCAGCTGAATGAGGAGATTTCATCTCTGCAGTTAAAGTGTGTTGTTGGAGTAAGAGAAGTTGTTGCAAAGATGTCCGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGCACCGAATACTGTTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAATCAGCAAAATGAGCCAGTTCCCACATCATCAGAAGGTGTTCAAGCTGGTCGAAGTAGTGGTTCTTCTAATTTCGTGCCTCCTGATGAGTATGAAGATCTTCGTGACGAAAAGCCTAATGAAGAAGGGCACAGTGATGGTGATACTGACAAATTTAGTGGTGGGGAGAATGTGGAAGGAGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCGCGCAAAGCTAATCAAACAGCAATTGCTGCTGAAAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGAAAGCTTTTGGATGCAAATGGTTTGGATATGAGTAAAGCATATATGCTAGATACACAAGAGGCAGCAGAGTCCAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAACCAGAAAACATTGTATGATGCATACAAAAAGAGGACAAAGAATGTGAATGTTGACCTTGAGGAATATAATAAGATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAATATGGAAAGGCACCTAAGATTTCAGAGGATAAGATAGACAATATGGTGAAAGAACTCAAGGACCGAGAGGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATTGATTCTATCAATGACCGCAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAA 2325 42.45 MAESNNGAQCTSIIRLYQQPNRSQGFQMAGKGNERLDCTHASNPYHVCFEHCSEKKGESKKQIARKYSGDGAMKYSGERKKTVRSDCTNGSNPYHNCNEFCSNITTQSGRPRAERDSGSGGATKDSRPKSPRKLNVSSMSAVSSKPQVTEARALPEENTNLKNGDYIKPYAEETCFVEDSLTIEEKNKFSHLILVSPNALKTDASSITYVKSKEDIKTRPDEISEIVQDPSVHDEEEGGHTTASLNITSFPFPDMVRNHIKWDEDEVKSVLSEPSVPVGKYYVKASSAPILQSIFNKHGDIAASCKLESSSIRSYYLESVCYIIQELQHTKFSQKVSKSKVKELLAIINDLVSSEMNVGWLHSILNDVAEAVESSSGQQWSLEVAKANCDHELELTKKELESRVEDLTRKEKEMGSAKAKVVDTRARLSELELKYGQLNEEISSLQLKCVVGVREVVAKMSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNFVPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESKYKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTALPD 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3713610 3721063 + CmoCh20G007430.1 Cmo20g00743 405060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00743 774 MobiDBLite consensus disorder prediction 117 131 - -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 718 743 - -
Cmo20g00743 774 Coils Coil 390 417 - -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 523 557 - -
Cmo20g00743 774 PANTHER GCIP-INTERACTING PROTEIN P29 460 774 IPR013260 -
Cmo20g00743 774 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 248 448 IPR007942 -
Cmo20g00743 774 Coils Coil 708 728 - -
Cmo20g00743 774 Coils Coil 421 448 - -
Cmo20g00743 774 PANTHER PRE-MRNA-SPLICING FACTOR SYF2 460 774 - -
Cmo20g00743 774 PANTHER PRE-MRNA-SPLICING FACTOR SYF2 80 206 - -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 105 157 - -
Cmo20g00743 774 Pfam SYF2 splicing factor 620 767 IPR013260 -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 132 147 - -
Cmo20g00743 774 PANTHER GCIP-INTERACTING PROTEIN P29 80 206 IPR013260 -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 496 520 - -
Cmo20g00743 774 MobiDBLite consensus disorder prediction 496 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00743 K12868 SYF2; pre-mRNA-splicing factor SYF2 - cmax:111483943 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00261 Cmo20g00743 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01747 Cmo-Chr11:12323805 Cmo20g00743 Cmo-Chr20:3713610 5.42E-07 wgd
Cmo19g00754 Cmo-Chr19:7687083 Cmo20g00743 Cmo-Chr20:3713610 4.33E-06 wgd
Cmo02g00261 Cmo-Chr2:1253118 Cmo20g00743 Cmo-Chr20:3713610 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g173 . . . . . . . . . . Cma02g00265 Cma20g00746 . Car20g00648 . . . . . . . . . . . . . . . . . . . . . Lsi10g00501 . Chy11g00249 . . . . . . . . . Sed01g0188 Cmo02g00261 Cmo20g00743 . . . . Cpe16g00321 Cpe05g01367 Bhi10g01837 Tan05g1122 Cmetu11g0186 . Hepe08g0301 . . Cla02g01175 Cam02g1254 . Cco02g1302 Clacu02g1236 Cmu02g1203 Cre02g1518 . Csa02g01399 . Cme11g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005153 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00743 Cmo_Chr20 FPKM 13.611482 12.683503 12.09075 11.817347 13.473393 13.851243 12.948295 13.941252 13.631908 14.798798