Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00745 ATGGAAGAAGGCGAGCTTGAATCCTCAAATCCAGAAGTGTTTTCGAGTTTGAATGCCGTCGAGCTTCCGAACAGTTGCTCAATGGATACCTTCTTGGATGAAATTCTAAAGGACACTCATGCTTGCACACACGCTCATACTTGCAATCCTTCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACTAAAGTTGTCTCTTCCCCGACCGAAGACAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGATAAGAAGACTAAGAAACGCTCGCTAGGTAACCGCGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCAAGGGCTGCATCATTGGAAGATGAAGTTATGAGATTGAAGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGCCAGGCTGCATTGGAGGCTGAGATTTCTAGGCTTAAATGTTTGCTTGTGGATATTCGAGGAAGAATTGAAGGGGAGATTGGAAGCTTTCCATATCATAAACCAGCCAATTCAAATCTTCTCAATCAAAATGCACCTGGAAGTTATGTGATAAATCCATGTAATGTTCAATGCAACGATCAGCCGTATTGCCTTAATGCAGGGTCCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAACGGGCATAGTTTTAGCGCGTGTGACATCGGAAATCTCGAGTGCTTGGCCAATCAAAACACAGGAGCAAAGGAACTTCCGGACTGTGAATTAAACCAGAAGAAAGGGGTCCGCCTGCCCCACGTCCATTCCTGTTCTTCTGTTCAGTGCAGCATCAACATTATCTTTCAGAACTAG 816 44.98 MEEGELESSNPEVFSSLNAVELPNSCSMDTFLDEILKDTHACTHAHTCNPSGPDYSHTHTCFHVHTKVVSSPTEDKVSTDDTAESVDKKTKKRSLGNREAVRKYREKKKARAASLEDEVMRLKALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGSFPYHKPANSNLLNQNAPGSYVINPCNVQCNDQPYCLNAGSDGKSGESVLLNGHSFSACDIGNLECLANQNTGAKELPDCELNQKKGVRLPHVHSCSSVQCSINIIFQN 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3731642 3734171 - CmoCh20G007450.1 Cmo20g00745 405062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00745 271 Coils Coil 98 132 - -
Cmo20g00745 271 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cmo20g00745 271 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Cmo20g00745 271 SUPERFAMILY Leucine zipper domain 89 134 IPR046347 GO:0003700|GO:0006355
Cmo20g00745 271 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Cmo20g00745 271 MobiDBLite consensus disorder prediction 77 100 - -
Cmo20g00745 271 MobiDBLite consensus disorder prediction 72 100 - -
Cmo20g00745 271 Gene3D - 76 153 - -
Cmo20g00745 271 CDD bZIP 97 144 - -
Cmo20g00745 271 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Cmo20g00745 271 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01739 Cmo20g00745 CCT
Cmo19g00747 Cmo20g00745 CCT
Cmo02g00256 Cmo20g00745 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00745 Cmo-Chr20:3731642 Cmo16g00688 Cmo-Chr16:3407956 4.02E-06 dispersed
Cmo11g01739 Cmo-Chr11:12283825 Cmo20g00745 Cmo-Chr20:3731642 3.65E-124 wgd
Cmo19g00747 Cmo-Chr19:7647003 Cmo20g00745 Cmo-Chr20:3731642 6.24E-128 wgd
Cmo02g00256 Cmo-Chr2:1232286 Cmo20g00745 Cmo-Chr20:3731642 1.57E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11759 PF07716 bZIP_2 1.80E-15 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00745 K25785 - cmax:111483945 494.582