Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00745 | ATGGAAGAAGGCGAGCTTGAATCCTCAAATCCAGAAGTGTTTTCGAGTTTGAATGCCGTCGAGCTTCCGAACAGTTGCTCAATGGATACCTTCTTGGATGAAATTCTAAAGGACACTCATGCTTGCACACACGCTCATACTTGCAATCCTTCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACTAAAGTTGTCTCTTCCCCGACCGAAGACAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGATAAGAAGACTAAGAAACGCTCGCTAGGTAACCGCGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCAAGGGCTGCATCATTGGAAGATGAAGTTATGAGATTGAAGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGCCAGGCTGCATTGGAGGCTGAGATTTCTAGGCTTAAATGTTTGCTTGTGGATATTCGAGGAAGAATTGAAGGGGAGATTGGAAGCTTTCCATATCATAAACCAGCCAATTCAAATCTTCTCAATCAAAATGCACCTGGAAGTTATGTGATAAATCCATGTAATGTTCAATGCAACGATCAGCCGTATTGCCTTAATGCAGGGTCCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAACGGGCATAGTTTTAGCGCGTGTGACATCGGAAATCTCGAGTGCTTGGCCAATCAAAACACAGGAGCAAAGGAACTTCCGGACTGTGAATTAAACCAGAAGAAAGGGGTCCGCCTGCCCCACGTCCATTCCTGTTCTTCTGTTCAGTGCAGCATCAACATTATCTTTCAGAACTAG | 816 | 44.98 | MEEGELESSNPEVFSSLNAVELPNSCSMDTFLDEILKDTHACTHAHTCNPSGPDYSHTHTCFHVHTKVVSSPTEDKVSTDDTAESVDKKTKKRSLGNREAVRKYREKKKARAASLEDEVMRLKALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGSFPYHKPANSNLLNQNAPGSYVINPCNVQCNDQPYCLNAGSDGKSGESVLLNGHSFSACDIGNLECLANQNTGAKELPDCELNQKKGVRLPHVHSCSSVQCSINIIFQN | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3731642 | 3734171 | - | CmoCh20G007450.1 | Cmo20g00745 | 405062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00745 | 271 | Coils | Coil | 98 | 132 | - | - | |
Cmo20g00745 | 271 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo20g00745 | 271 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 240 | - | - | |
Cmo20g00745 | 271 | SUPERFAMILY | Leucine zipper domain | 89 | 134 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo20g00745 | 271 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo20g00745 | 271 | MobiDBLite | consensus disorder prediction | 77 | 100 | - | - | |
Cmo20g00745 | 271 | MobiDBLite | consensus disorder prediction | 72 | 100 | - | - | |
Cmo20g00745 | 271 | Gene3D | - | 76 | 153 | - | - | |
Cmo20g00745 | 271 | CDD | bZIP | 97 | 144 | - | - | |
Cmo20g00745 | 271 | Pfam | Basic region leucine zipper | 87 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo20g00745 | 271 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 240 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01739 | Cmo20g00745 | CCT | |
Cmo19g00747 | Cmo20g00745 | CCT | |
Cmo02g00256 | Cmo20g00745 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo20g00745 | Cmo-Chr20:3731642 | Cmo16g00688 | Cmo-Chr16:3407956 | 4.02E-06 | dispersed | |
Cmo11g01739 | Cmo-Chr11:12283825 | Cmo20g00745 | Cmo-Chr20:3731642 | 3.65E-124 | wgd | |
Cmo19g00747 | Cmo-Chr19:7647003 | Cmo20g00745 | Cmo-Chr20:3731642 | 6.24E-128 | wgd | |
Cmo02g00256 | Cmo-Chr2:1232286 | Cmo20g00745 | Cmo-Chr20:3731642 | 1.57E-156 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11759 | PF07716 | bZIP_2 | 1.80E-15 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00745 | K25785 | - | cmax:111483945 | 494.582 |