Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00747 ATGACTGTTGATCATGAGGATTCTGAGGCAATCGAAAAGAAGAAGAAGAAGAAGAAGAAGAATGTGTTAGTGGGGATTAGAATAAATGGCAATAGCAGAGATTTGCTCAATTGGGCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTTATTGTAATCCATGTTTGTCAAACTTCTGGTGGGTTTTCATTGTTCTTCTTTAGTTTTAACTCTTTACATTCACTTTTTCATATGATTTTTCCCTCTTGCCAAACAGACCGTGCATCAAAAGATAAGCCCTTATTTGATGAATTCATAGAAGGATACAAAAGGCTTTGTGATGTAAACAAGGTAGCTCTGATTGCTCAGATATCGACTGGAAGTTCGGTTAAGAAGACTTTGGTTAGACAGGCGAAAAGCTATGCCGCCGGGGCCGTGGTTTTGGGAACAAGCAAACCATCTAATCTTGGATACGTTGTTAAGCGACTGCCTCGAACGACCGATGTTTTGGCTCTCAACAATGGCAAAATTGTCTTCAGAAGATCCACCAATGATCAACTACCAGGGTTGAATCTAGACCCAAAACCAAGCTTAAGTCAAGCTAGCCAATCTGACTTTGATGGCTCTGAGACTGAGAAATCTGTTTCTTATGGGGTTGGTAGTGAAGACTTGAAGGATGAATTTCATGGAGTTGTTCTTGAAAGTAAAAGGGTTTGTTCCAAACAAGATTCTCCAATGAAGAAGGTGAATTCCGAGCCGGGGCTTGGTTGGCCATTGCTTCGAACGTCTCCAAGGATTCCGCAAACCCCATGTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCCGATCGTTCCCCGTTTCATAGCTTAAGCATAAAAGGAAATGATCCATCACGAAGCGAGATCTCGGGTTTATCTGCCTTTTCTGAACCACCAGGAAACCTGGAGGATCTCTTGAAAACTATCTCAACTAGTTATAAATGGTTTAGTCCTGATGTGTTGAAAGCTTCAACTTCGCATTTCTCTTCAGAAAATCTGATTGGGAAAGGCGGCTGCAATCGTGTATACAAAGGAATTCTCCCAGATGGTAAGCCAATAGCTGTTAAGGTAATGAACTTTTCGAAACAGGCATGGAACGATTTTTCTCGAGAAGTTGACATTATATCCTCGTTACATCACAAGAACATAACTCCCTTTCTCGGTATCTGCATCGAACACGATACGTTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGAAAATTTATATGATAGAAACAAAGAAAAAGGCGTACTTTCATGGGAGGTAAGATTCGAGTTTGCGATTGGAATAGCGGAAGCGCTAAACTACCTACACGACGAATGTCCTCAGCCTGTTGTACACAGAGATGTCAAGACATCAAACATTCTGCTCACCGATGAACTCGAACCACAGTTATCAGATTTTGGGCTTGCAACCTGGGGACCGACAGAATCATCCTTTCGGATCGAAGCTGATGTCGTGGGAACGTTTGGATATCTTGCTCCTGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCGTTTGGTATCGTTCTACTTGAATTGTTATCGGGACGAAGAGCAATCAGCACCGAGACATCGAAAGAGCAGCAGAGCCTGGTTATGTGGGCCAAGCCAATGATAGAGAATGGCAATGTAAAGAACATAGTTGATCCAAATTTGGAGGGGAAATTCAATGACGAACAGTTGCAAAGAATGCAACGCTTTGCATCACGAGGGCATCTCGACTCCGTCCTAGAATCAGTCAGGTATTGCTTTGAACACGATTCGTTTCACCAAACCACATTGTTTGCATTACTCAAAGACGTTTACGAACGCCCTTCGTTCCAGATATTGAAGATTCTAAGAGGGGAAAGCAAAACCGAAACCGAAAACATCCATATGGAGGATTCACAAAGCGTGGAGAACGGAGATGATGAAGTTTATCCAAATTCAAGCTCGGAACTGCATTTGAGCCTTGCATTGGTCGGTGTTGACGACGACAACGACAACGACGGTGACGACTCATTTAGCAGTGTGGAACAGCGAAAAAGAATATGTTTGGAAGATTATTTGAAAGCAAGATGGAGCAGATCCTCAAGCTTCAACCAGCTTCTTTAG 2151 42.07 MTVDHEDSEAIEKKKKKKKKNVLVGIRINGNSRDLLNWAIVKVADPGDCVIVIHVCQTSGGFSLFFFSFNSLHSLFHMIFPSCQTDRASKDKPLFDEFIEGYKRLCDVNKVALIAQISTGSSVKKTLVRQAKSYAAGAVVLGTSKPSNLGYVVKRLPRTTDVLALNNGKIVFRRSTNDQLPGLNLDPKPSLSQASQSDFDGSETEKSVSYGVGSEDLKDEFHGVVLESKRVCSKQDSPMKKVNSEPGLGWPLLRTSPRIPQTPCVHNMSVVQWVMNLPDRSPFHSLSIKGNDPSRSEISGLSAFSEPPGNLEDLLKTISTSYKWFSPDVLKASTSHFSSENLIGKGGCNRVYKGILPDGKPIAVKVMNFSKQAWNDFSREVDIISSLHHKNITPFLGICIEHDTLISVYDFFSKGSLEENLYDRNKEKGVLSWEVRFEFAIGIAEALNYLHDECPQPVVHRDVKTSNILLTDELEPQLSDFGLATWGPTESSFRIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAISTETSKEQQSLVMWAKPMIENGNVKNIVDPNLEGKFNDEQLQRMQRFASRGHLDSVLESVRYCFEHDSFHQTTLFALLKDVYERPSFQILKILRGESKTETENIHMEDSQSVENGDDEVYPNSSSELHLSLALVGVDDDNDNDGDDSFSSVEQRKRICLEDYLKARWSRSSSFNQLL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3738608 3741365 - CmoCh20G007470.1 Cmo20g00747 405064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00747 716 SMART serkin_6 337 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00747 716 MobiDBLite consensus disorder prediction 181 209 - -
Cmo20g00747 716 ProSiteProfiles Protein kinase domain profile. 337 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00747 716 Pfam Protein kinase domain 338 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00747 716 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 622 686 - -
Cmo20g00747 716 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cmo20g00747 716 MobiDBLite consensus disorder prediction 181 212 - -
Cmo20g00747 716 SUPERFAMILY Protein kinase-like (PK-like) 317 581 IPR011009 -
Cmo20g00747 716 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 18 584 - -
Cmo20g00747 716 PANTHER OS08G0249100 PROTEIN 622 686 - -
Cmo20g00747 716 CDD USP_Like 21 163 - -
Cmo20g00747 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cmo20g00747 716 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 150 - -
Cmo20g00747 716 Gene3D Transferase(Phosphotransferase) domain 1 412 644 - -
Cmo20g00747 716 Gene3D HUPs 2 161 IPR014729 -
Cmo20g00747 716 PANTHER OS08G0249100 PROTEIN 18 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00747 - - - csv:101206547 1001.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00255 Cmo20g00747 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00747 Cmo-Chr20:3738608 Cmo20g01056 Cmo-Chr20:9746735 4.45E-20 dispersed
Cmo19g00781 Cmo-Chr19:7846843 Cmo20g00747 Cmo-Chr20:3738608 2.00E-61 wgd
Cmo02g00255 Cmo-Chr2:1225995 Cmo20g00747 Cmo-Chr20:3738608 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75164 PF00069 Pkinase 1.90E-40 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00747 Cmo_Chr20 FPKM 0.0 0.0 20.550762 0.0 14.402504 0.0 0.0 0.0 39.179207 37.70116