Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00750 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCTGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACCCGTTCTAGCAAGCGCGCTCGTCTCTCTGGTACTTTCTCTTCGAATCTTGCTGCATCCACTCTTTCGATCTCAACACGTTCTCGCTCTACTCGAAACCAAGAACCGTCTGCCACTAGTACTCCAATGGACTCGACCAATGAGTCATCAGGGTCACGCCGACGCGGAAAGAATTCTGATAAGGAAAACTCGGATAAGGGGAAGGAGAAAGAACACGAGGTTAGAATCGGGGATAGAGAAAGAAATGCTGAGCAGAGTTTTGGGTTAAATATTGAAGGCAGTGGCGGTGGGGATGATGATGATAACGACAGTGAAGGAGGAATGGGAGTCTTACAGCAAAATTTATCCACAGCAAGCAGCGCCCTTCAAGGACTTCTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCATCTTCCGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGAAGGCAGGTTGAGGCATTGACCCAACTTTGTGAGATGCTCTCTATTGGCACCGAGGAGTCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTCGTTGGGCTACTTAATCACGAAAGCAATCCTGATATAATGCTTTTAGCGGCCAGGGCACTGACCCATCTGTGCGATTTCTTACCTTCATCATGTGCTGCCGTCGTGCATTATGGTGCCGTTTCCTGCTTCTGTGCTAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCCTGTCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGAGAGTTGCGTTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTCGTGATGGAAGCTGTTCCCCTGCTGACGAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTGTGTAACCATGGACTTGTTACTCAAGCTGCCTCACTCATTTCCACCAGTAGTACCGGAGGTGGGCAGTCAACTCTTAGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGGGAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATTCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTCTCTTGGAATTCAGGATTCAAATTTTTACCCCTTCTACAATTCCAAGCTTCAGACGCTGAAAGTTGCTTTCTTTGGTAATGGCGTGGTTTCTTGGATTTTTGAGATTGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAACTATTTCCTTTCCGCCCAACTATAATTTGTTTGTGAAAGGACCTGTCATCAAAAAGCCATCTACCAGCGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGCCCCGGAGATGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATCTTAATACAGATCTATGGATCCAGTGTGAATGGTCCGGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACCCCAGAGATGATACAGTCATTATTGAATGTGACCAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTTTGATTCCTTCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACTTTTTCTAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACTGCTACCCAAGTGGCTTCTGTTGAGAAGGACAACAACTCTGCATCTGGAGCTTCTTCACGCACTCGACGTTACAGGCGGCGCAGTGGAAATATGACTTCAGAAGGAAGTTCACTGGATGAAAACAAAAATCCTGTTTCTGGAGGCAGTGTTCCACAAGGTTCGGTGGAGGTTCCATCAATTAACTCTAATCTCCGAACTTCGGTAAGTGCCTGTGCCAATGCTTTTAAAACAAAGTATTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGCGCCAAGTTGAATGCTGGTATTGATGTTCAGAAAAGTAAATCGAAAGGAAAGTCGAAAGCTTCAGGGTCCTGCATAGATGATATTATTACAAATAAGGATCAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTAGGCAAAGATGATGGTGTTTCCACGTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTGACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTTGGAAGCGGAGTTGCCAAAGATTCGGCAGCAAGTGCTTAAAAGATTTAAATCATTTGTTTCTGTTGCTCTTTCCACAAGCATTAATGAGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCATTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCATGGAGAAAAATTACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAGAAGTGAGGGTCAGAAACTTTCAGTATCTGGTGCAAACTCAGATTCAGGAACTACTCCTCCAGGAACTGTTGCTCCATCAGGGCTAAAATCAACCCCCAGTTCAACCACTTGCCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGGGCAGGGAAGGAGTTGTCACAGGATAAAAGCACATCGAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTACAAACCAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACCACTTCCGAGGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACACAGCTGAAGATGGCGATGCTGGTCCGGCTACAAGTGATAGCCAGATTCATTCAACTTTTGGCTCTAGCAGTAGAACTGCGACAGTCAGGGGTTCTAATTCTCCTGATCATAGGGGTGGAAATTCTTTTAGTGCAAGGGGAAGTATGACATTTGCTGCTGCTGCTATGGCTGGACTTGGACCAGCTAACGGCAGAGGTTTCCGTGGAGGTCGAGATCCACAGGGACATCCTCTCTTTGGTGGTTCCAATGATAACCCAAAATTACTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTTTTGAATGAGGATGATGATGAGAGGTTTGCTGGGGCTGGCAATGATTTCTTATCTAATGATGGGAGCAGTTTGTGGGGTGATATATATACCATCACGTATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAATTCAAACTCAGAGTCTCAGTTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATCCTACATATGATATACTATCTTTATTACGTGTACTTGAGGGATTGAATCAGCTTGCTCCTCGCTTGAGGGCTCAAATAGTGTCAGATCAATTTGCAGAGGGAAAGATCACTACGCTTGATGAATTGGGTGGAATTGGAGGAAAGGTTCCTCATGAGGAATTTGTCAACAGTAAGCTTACTCCCAAATTGACTCGACAAATTCAAGACGCTCTTGCACTGTGCAGTGGGAGCCTTCCTTCATGGTGTTATCAATTGACTAAGGCATGCCCGTTCTTGTTTCCTTTTGAGACACGGCGACAATATTTTTATTCAACTGCATTTGGGTTGTCACGTGCGTTATATCGGCTACATCAGCAGTTAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAGGTTCGTGTCTCCCGTAATCGTATACTGGATTCTGCTGTGAAAGTTATGGAGATGTATTCTAACCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAATAGATAGTGGTGAAGATGGACAGCTCAGGAAGCCTAAAGATGGCTCTAAGCTTATTTCTGATGCAGGCAATATTGATATCATCCAATCTCCTCTTGGGTTGTTTCCACGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCTAAGGCTTTGCAAGATGGAAGACTATTGGATCTACCACTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGTACGATATCCTCTCATTTGACCCTGAGCTTGGGAAGACTCTACAAGAACTGCAGGCTCTTGTCTGCCGGAAACAGTATTTAGGATTGGTAGATGGTGACAATCAAAATACAATTTCCAACTTATCTTTCCGTGGCATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGCTATCCGGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCAACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTACAGGATTCAATCAGGTTTTTGACATCACTGCATTACGCATATTCATTCCCCATGAATTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCTGACACACTTGTTGATCATATTAAATTTGATCATGGATACACAGCCAAAAGTCCTGCCATAGTCAATTTTCTTGAGATTATGGGCGAACTCACACCGGAGCAGCAGCGAGGATTCTGCCAATTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTCGCAGTGCTGAATCCAAGATTGACTATCGTGAGAAAGCACTCATCAACTGCAACAAACGCAGCAAACAGTGCGACAGGGGTATCTGAATCAGCAGACGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCGACCAAGGAAATAATGTACAAGAAACTAATGTATGCGATCAATGAGGGGCAAGGATCATTTGATTTGTCATGA 5676 44.03 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSGTFSSNLAASTLSISTRSRSTRNQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGDDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDFLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGGKTLLLLGISGILKDILSGSGVSTNSSVSPALNRPQEQISLGIQDSNFYPFYNSKLQTLKVAFFGNGVVSWIFEIVNLANELLPPLPQGTISFPPNYNLFVKGPVIKKPSTSGSVKEEDPTDSAPEMSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPSLQIAEILMEKLPETFSKMFLREGVVYAVDQLILANNQNTATQVASVEKDNNSASGASSRTRRYRRRSGNMTSEGSSLDENKNPVSGGSVPQGSVEVPSINSNLRTSVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCAKLNAGIDVQKSKSKGKSKASGSCIDDIITNKDQYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLDYFSCGYFSKGRILEAELPKIRQQVLKRFKSFVSVALSTSINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAHGEKLLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSEGQKLSVSGANSDSGTTPPGTVAPSGLKSTPSSTTCRYSTRSRSSMTIGERAGKELSQDKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEVLQDDSLPLCMPEKVHDVKLGDTAEDGDAGPATSDSQIHSTFGSSSRTATVRGSNSPDHRGGNSFSARGSMTFAAAAMAGLGPANGRGFRGGRDPQGHPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGNDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITTLDELGGIGGKVPHEEFVNSKLTPKLTRQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQLGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAVKVMEMYSNQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIDSGEDGQLRKPKDGSKLISDAGNIDIIQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLYDILSFDPELGKTLQELQALVCRKQYLGLVDGDNQNTISNLSFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTTGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGELTPEQQRGFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGVSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3750324 3763483 - CmoCh20G007500.1 Cmo20g00750 405067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 1275 1299 - -
Cmo20g00750 1891 Gene3D - 166 465 IPR011989 -
Cmo20g00750 1891 Gene3D Hect, E3 ligase catalytic domain 1762 1889 - -
Cmo20g00750 1891 SMART hect_3 1481 1891 IPR000569 GO:0004842
Cmo20g00750 1891 Gene3D Hect, E3 ligase catalytic domains 1407 1653 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 713 741 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 10 73 - -
Cmo20g00750 1891 ProSiteProfiles HECT domain profile. 1491 1891 IPR000569 GO:0004842
Cmo20g00750 1891 SUPERFAMILY Hect, E3 ligase catalytic domain 1459 1884 IPR035983 GO:0004842
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 993 1037 - -
Cmo20g00750 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 50 471 IPR045322 GO:0006511|GO:0061630
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 1132 1166 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 1120 1166 - -
Cmo20g00750 1891 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 504 1099 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 74 106 - -
Cmo20g00750 1891 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 50 471 - -
Cmo20g00750 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1099 1891 IPR045322 GO:0006511|GO:0061630
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 1 134 - -
Cmo20g00750 1891 CDD HECTc 1467 1886 IPR000569 GO:0004842
Cmo20g00750 1891 SUPERFAMILY ARM repeat 177 679 IPR016024 -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 1043 1086 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 687 741 - -
Cmo20g00750 1891 Pfam HECT-domain (ubiquitin-transferase) 1515 1891 IPR000569 GO:0004842
Cmo20g00750 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 504 1099 IPR045322 GO:0006511|GO:0061630
Cmo20g00750 1891 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1099 1891 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 687 702 - -
Cmo20g00750 1891 MobiDBLite consensus disorder prediction 993 1103 - -
Cmo20g00750 1891 SMART arm_5 209 250 IPR000225 GO:0005515
Cmo20g00750 1891 SMART arm_5 335 373 IPR000225 GO:0005515
Cmo20g00750 1891 SMART arm_5 292 332 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00750 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3235.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00253 Cmo20g00750 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00347 Cmo-Chr6:1678681 Cmo20g00750 Cmo-Chr20:3750324 6.39E-112 dispersed
Cmo14g00179 Cmo-Chr14:816153 Cmo20g00750 Cmo-Chr20:3750324 5.86E-110 dispersed
Cmo17g00340 Cmo-Chr17:2062621 Cmo20g00750 Cmo-Chr20:3750324 1.79E-14 dispersed
Cmo17g00376 Cmo-Chr17:2314870 Cmo20g00750 Cmo-Chr20:3750324 2.98E-30 dispersed
Cmo20g00750 Cmo-Chr20:3750324 Cmo05g00559 Cmo-Chr5:2709016 1.16E-32 dispersed
Cmo02g00253 Cmo-Chr2:1202717 Cmo20g00750 Cmo-Chr20:3750324 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00750 Cmo_Chr20 FPKM 22.082138 20.812193 11.172859 8.798123 6.132917 7.679627 5.866057 11.331926 11.316115 10.959347