Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00760 ATGGCTTCCTCGTTCCGCCGTTTAACCGCTTTCATTTTCGCATCACTCCATTTACTCGCCATTTGCAGAGCCGCCACATTCACCTTCGTTAACCGGTGCGATTTCACCGTTTGGCCCGGCATTCTCGCCAATGCCGGCAACCCTACTCTCGGCACCACCGGTTTCGAACTCCCCAAGGACACTTCCCGCTCCTTTCTCGCTCCTACTGGTTGGTCCGGTCGTTTCTGGGGCCGAACTACCTGTAACTTCGACGGATCCGGTTCTGGATCCTGCGTAACCGGCGACTGCGGTTCTGGTCAAGTCGAGTGCAATGGCGCTGGAGCTGCCCCGCCGGCTACTCTCGCTGAGTTCACTCTCGGTACTGGCGGGCAGGACTTTTACGATGTTAGTCTCGTTGATGGATATAATCTCCCCATGATCGTTGAAGGAACCGGCGGGTCTGGTCAGTGTGCTTCGACGGGATGCTCCACGGATCTGAACCGTCAATGTCCGCCGGAGCTGAGAGTTGGGGAAGGAGACGCGTGTAAGAGCGCGTGTGAGGCGTTTGGGACTGCGGAGTATTGTTGTAGCGGCGCGTACGGTTCACCCAACTCTTGTAAGCCGTCGGTGTACTCGGAAATGTTCAAATCTGCTTGTCCGAGGTCGTATAGCTACGCCTACGACGATGCTACGAGCACATTCACTTGTACCGGCGCCGATTACACCATTACATTTTGCCCTTCATCTCCAAGCCAAAAATCATCGAGTATTCCTACTCCAACAACACCTGATGCATCTCAAGAGTATGGATCTGAATCTGGGTTTGAGTCGGGGTCGGGGTCGGAGTATGGGATGGGGTATTCGGGAGCCTCTGGAACGGATATGTTAGGGAGAGGTGCTAGTTCAGGATCAGAGTTGGGGTCGGGGTCAGGGTCGGGGTCGGCGTCAGGATCTGGGGAAGCTATGCTAGCAGATGGGTCATGGTTGGCTGGTCTGGCTATGGGAGACGCAGCTAAAACTGTGTCTCCTCCATCCATTATACTGTTTGTTGTAACGTTTATTGTTATCTTGTCTTCTGTATTCTTGTAG 1068 54.12 MASSFRRLTAFIFASLHLLAICRAATFTFVNRCDFTVWPGILANAGNPTLGTTGFELPKDTSRSFLAPTGWSGRFWGRTTCNFDGSGSGSCVTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGQCASTGCSTDLNRQCPPELRVGEGDACKSACEAFGTAEYCCSGAYGSPNSCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTGADYTITFCPSSPSQKSSSIPTPTTPDASQEYGSESGFESGSGSEYGMGYSGASGTDMLGRGASSGSELGSGSGSGSASGSGEAMLADGSWLAGLAMGDAAKTVSPPSIILFVVTFIVILSSVFL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3817606 3819384 - CmoCh20G007600.1 Cmo20g00760 405077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00760 355 SMART tha2 27 240 IPR001938 -
Cmo20g00760 355 MobiDBLite consensus disorder prediction 291 310 - -
Cmo20g00760 355 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 15 266 - -
Cmo20g00760 355 CDD TLP-PA 26 239 - -
Cmo20g00760 355 MobiDBLite consensus disorder prediction 241 271 - -
Cmo20g00760 355 MobiDBLite consensus disorder prediction 241 273 - -
Cmo20g00760 355 Gene3D Thaumatin 25 240 IPR037176 -
Cmo20g00760 355 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Cmo20g00760 355 Pfam Thaumatin family 31 240 IPR001938 -
Cmo20g00760 355 MobiDBLite consensus disorder prediction 291 311 - -
Cmo20g00760 355 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Cmo20g00760 355 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Cmo20g00760 355 PANTHER OS03G0233200 PROTEIN 15 266 IPR001938 -
Cmo20g00760 355 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cmo20g00760 355 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cmo20g00760 355 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Cmo20g00760 355 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cmo20g00760 355 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00760 - - - cmos:111448558 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00418 Cmo-Chr7:1899508 Cmo20g00760 Cmo-Chr20:3817606 1.20E-125 dispersed
Cmo18g00053 Cmo-Chr18:341546 Cmo20g00760 Cmo-Chr20:3817606 2.81E-86 dispersed
Cmo20g00760 Cmo-Chr20:3817606 Cmo20g00761 Cmo-Chr20:3822026 2.44E-93 tandem
Cmo20g00760 Cmo-Chr20:3817606 Cmo03g00705 Cmo-Chr3:6122594 1.84E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00760 Cmo_Chr20 FPKM 167.336624 175.823959 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0