Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00761 ATGCGAAGTGCTGTGTATTTCTCTCGCAACAAGGAAGGTAAAGTTCTTCCAATCCCATCAAAACCCCAATCTTATCGCTTTTCCTTCAATCTTCCAATGGATCGCTCACTCCTCCTCGCCACTCTTTTCACTCTTCTTCTTCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGCTAATCAACAAGTGTCGGACCACGATTTGGCCGGGTCTGTTATCAGGCGCCAACACCCCCCAGCTTCCGACCACCGGCTTCGCCCTCCGCAGCGGCAAATCCAAGATCGTTCCGGTCCCGAAATCTTGGTCGGGTCGGTTATGGGGTCGGACCCTTTGTGGGTTAGATTCAGATGGGAAGTTCTCTTGTCTCACCGGCGATTGTGGGTCGGGTAAAGTGGAGTGTGACGGCGGCGGTGCTAAACCACCGGCTACCTTGGCGGAGTTCACTCTCAACGGCGCCGATGGGCTTGATTTTTACGACGTCAGCTTGGTCGACGGTTATAATCTTCCGATGCTGGTTGTGGCCAAAGGTGGAACCAGAGGCGGTTGCGCTGCTACCGGCTGTTTGGTGGATTTGAACGGCGCGTGTCCATCGGAGCTACGAGTAGCGCGTGGTGGTAGTCGCGGTGGAAGTAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGCAGTGAAGCGTTCTCTACGCCTGACACGTGTCGTCCTTCTGTATATTCGGAGTTCTTCAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGCGCATCCGCCGACTACCTTATCATATTTTGTCCACTACCTTACACCAGTCAGAAAGTGTTGAGTGCAAGGAAAGACGGGGCAGCGTTACCGCTCGTGAACAAGACCATGATGTACTTGAGAAGCCGAAGATCGATCAGCATTCGATCGGCAGGTTTAACTCAATACTAA 972 51.95 MRSAVYFSRNKEGKVLPIPSKPQSYRFSFNLPMDRSLLLATLFTLLLLLPDVQSTSFKLINKCRTTIWPGLLSGANTPQLPTTGFALRSGKSKIVPVPKSWSGRLWGRTLCGLDSDGKFSCLTGDCGSGKVECDGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTRGGCAATGCLVDLNGACPSELRVARGGSRGGSSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEFFKHACPRSYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSARKDGAALPLVNKTMMYLRSRRSISIRSAGLTQY 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3822026 3823724 - CmoCh20G007610.1 Cmo20g00761 405078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00761 323 SMART tha2 57 279 IPR001938 -
Cmo20g00761 323 ProSitePatterns Thaumatin family signature. 117 133 IPR017949 -
Cmo20g00761 323 Gene3D Thaumatin 55 279 IPR037176 -
Cmo20g00761 323 PRINTS Pathogenesis-related protein signature 56 68 IPR001938 -
Cmo20g00761 323 PRINTS Pathogenesis-related protein signature 104 115 IPR001938 -
Cmo20g00761 323 PRINTS Pathogenesis-related protein signature 156 172 IPR001938 -
Cmo20g00761 323 PRINTS Pathogenesis-related protein signature 269 278 IPR001938 -
Cmo20g00761 323 ProSiteProfiles Thaumatin family profile. 54 279 IPR001938 -
Cmo20g00761 323 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 43 290 - -
Cmo20g00761 323 CDD TLP-PA 56 278 - -
Cmo20g00761 323 PANTHER OS03G0233200 PROTEIN 43 290 IPR001938 -
Cmo20g00761 323 SUPERFAMILY Osmotin, thaumatin-like protein 56 279 IPR037176 -
Cmo20g00761 323 Pfam Thaumatin family 61 279 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02036 Cmo-Chr1:14274908 Cmo20g00761 Cmo-Chr20:3822026 6.00E-115 dispersed
Cmo05g00314 Cmo-Chr5:1394117 Cmo20g00761 Cmo-Chr20:3822026 7.71E-118 dispersed
Cmo07g00420 Cmo-Chr7:1903420 Cmo20g00761 Cmo-Chr20:3822026 4.75E-100 dispersed
Cmo09g00095 Cmo-Chr9:456782 Cmo20g00761 Cmo-Chr20:3822026 3.90E-121 dispersed
Cmo12g00355 Cmo-Chr12:2200133 Cmo20g00761 Cmo-Chr20:3822026 5.46E-80 dispersed
Cmo20g00760 Cmo-Chr20:3817606 Cmo20g00761 Cmo-Chr20:3822026 2.44E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00761 - - csv:101216503 493.812