Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00770 ATGGCGGTGGTGTCTACTTCTCTCGCATCTCAGCTCTCAGCTATCAGATTGTCCACTTCCAAGTCCGACATTTCTCAGACTCTGTTTCAGAACGTCCACTCACAAATCCGCCTTGCATCCTCCCGGAAAGGTCCCCGTGGTGTTGTCACCATGGCCGGTTCCGGCAAGTTCTTCGTTGGTGGAAACTGGAAATGTAATGGTACAAAGGAATCAATAACCAAGCTTGTCTCAGATTTGAACAATGTAAAGTTGGAGGATGATGTTGATGTTGTTGTAGCACCTCCATTTCTGTACATTGATCAGGTGAGGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGGTGGCGCTTTTACAGGAGAAATCAGCGTTGAACAATTGAAAGATATAGGCTGCAAGTGGGTTATCCTTGGGCACTCTGAACGGAGACATGTCATTGGTGAAGATGACCAGTTTATAGGAAAGAAGGCTGCCTATGCCTTGAGCGAGGGTCTTGGAGTAATAGCTTGCATCGGGGAATTACTAGAGGAAAGGGAAGCTGGGAAAACTTTCGATGTTTGCTTTCAACAATTGAAAGCCTATGCAGGCAAGTTGCTGGCCCATTCCTTATTTCACTTTCACGATAATCTTATAATCACTTATCTGAGAACAGAAAACTGCGGAACTCTCTGTAACTTTAATGCTGTTTCAAGTTGGGATGGTATCGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACTCCCGAGCAAGCACAGGAAGTGCATGCAGCAGTTCGCGATTGGCTTAAGAAGAATGTATCACCAGAAGTGGCTTCTAAAACACGGATTATTTATGGAGGATCTGTGAATGGAGGTAATTGTGCTGAGCTTGCTAAAAAAGAGGACATAGATGGATTTCTAGTGGGAGGCGCTTCGTTGAAGGTGCATTTCTTCCTCTCCCCTTATGTTTTTCTAACGTTTCTGTCAAACCATAGAAGAAAAAGTTTGGCGAACCATACTCAAAGTCCCATCTCAAATCTGTTTCATGGTCCTGAATTTGGAACAATCGTTAATTCCGTTACCGCCAAGAAAGTCGCTGCTTGA 1119 44.95 MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGPRGVVTMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVRSSLAPRIEISAQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYAGKLLAHSLFHFHDNLIITYLRTENCGTLCNFNAVSSWDGIVIAYEPVWAIGTGKVATPEQAQEVHAAVRDWLKKNVSPEVASKTRIIYGGSVNGGNCAELAKKEDIDGFLVGGASLKVHFFLSPYVFLTFLSNHRRKSLANHTQSPISNLFHGPEFGTIVNSVTAKKVAA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3863703 3867895 + CmoCh20G007700.1 Cmo20g00770 405087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00770 372 Hamap Triosephosphate isomerase [tpiA]. 55 329 IPR022896 GO:0004807|GO:0006096
Cmo20g00770 372 PANTHER TRIOSEPHOSPHATE ISOMERASE 4 205 IPR000652 GO:0004807
Cmo20g00770 372 PANTHER TRIOSEPHOSPHATE ISOMERASE 234 320 IPR000652 GO:0004807
Cmo20g00770 372 SUPERFAMILY Triosephosphate isomerase (TIM) 56 324 IPR035990 GO:0004807
Cmo20g00770 372 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 56 329 IPR000652 GO:0004807
Cmo20g00770 372 TIGRFAM tim: triose-phosphate isomerase 58 319 IPR000652 GO:0004807
Cmo20g00770 372 Gene3D Aldolase class I 35 327 IPR013785 -
Cmo20g00770 372 ProSitePatterns Triosephosphate isomerase active site. 245 255 IPR020861 GO:0004807
Cmo20g00770 372 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 4 205 - -
Cmo20g00770 372 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 234 320 - -
Cmo20g00770 372 Pfam Triosephosphate isomerase 58 324 IPR000652 GO:0004807
Cmo20g00770 372 CDD TIM 57 325 IPR000652 GO:0004807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00770 K01803 TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1] - csv:101213372 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00325 Cmo20g00770 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00803 Cmo-Chr2:4939714 Cmo20g00770 Cmo-Chr20:3863703 6.93E-100 dispersed
Cmo20g00442 Cmo-Chr20:2057806 Cmo20g00770 Cmo-Chr20:3863703 6.40E-100 dispersed
Cmo02g00326 Cmo-Chr2:1682817 Cmo20g00770 Cmo-Chr20:3863703 2.53E-109 transposed
Cmo02g00325 Cmo-Chr2:1679683 Cmo20g00770 Cmo-Chr20:3863703 2.21E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g110 . . . Bda08g01041 . . Bma05g00412 . . . Cma02g00330 Cma20g00770 Car02g00210 Car20g00673 . . . . . . . . . . . . . . . . . . . . Cone10ag1184 Lsi10g00462 . Chy11g00296 . . . . . . . . . . Cmo02g00325 Cmo20g00770 . . . . Cpe16g00296 . Bhi10g01892 . . . Hepe08g0946 . . Cla02g01114 Cam02g1187 . . Clacu02g1177 Cmu02g1137 . . Csa02g01353 . Cme11g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008639 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00770 Cmo_Chr20 FPKM 52.061893 55.36311 114.054016 109.729324 211.240875 204.181381 209.472275 111.493866 113.546127 111.879234