Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00774 ATGGAGGTCACCTTCTCTTCCAAGCCTCAATCACTGATGTTCAATCCATGTCTTCCTGTCAATTCTTCTTCCTCCTTCTCCTACTCTCGGCTCCGCTTCGTTCGCCGGCAATTCCTTGGCGGTGGTCATAATCTCCGCCCGCCAGATTCCTTGCGCACTCGTCGGAAGTGCAGGAAGGCTGGCTTGTTTGTTCAGTCTCCGAGGTACATTTTCCGAGCTACGTTGAGTTCGAATCCGGCTCTCATCGTTGTTGCTGTGGTTACCTTCTCTGCTGTCTCGTTCATCTACATGCAACTCAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAACCTACAAAGCTTGCCTTATCTCAACTAGGTAGAGACATCAACTGGTCTGCCGATGGTGAGATAATGGGCTTTAGGGAGCACCATGGCGTCTTTTTAGAGCAGAACATAGCCATTAAAGATAGAACTGAAGAGAGAAGTTCTAATGGGGAAGAAGAGACTGTTCTGCAGCTTCAAAAATCTGTTCTGTCACAGGAGGCCAGTGTCACCGAATCATTGCAGCCATCTGTTTCTGAAGTTACTACTTCTAAGGATAGTGATTCTCTGTTATCAGATGAAAGTGAAGCGGCAGATCTTTCTCTTCTTTCTGATATATTTGAACCTCGGGTCCTACAGCCTCTTATGTTTCCCAATGACATGACTGACTTACCACTGAACGGATCTCATGTCAAATCCCACTCTGACTTGCCTGTTTTGGTTGATGCAACGGAGCTTCCACCTGTTGCTGGTCCTTTATATAGTGTATATAATCCAGTGACTCAACATTTCCAAGCAGATGGTGAGCCTGTAAAAGAGGAAAAATTTACCAGTTCCAACTTTCTAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGACACAGAGTCAAGTAGTCAAACAGAAACTTCTCGAACTTCTCATCTATACAACCGAAATTTTTCTTCAGTGATGATTAATGGTGTCTCGAGAGGAGCAGAATTAGTACCAGATGATTCTCTGCACATTGCAGGGTATGTTCAAAGAAATGTACCTGTTGCATATAAGGAAGGTTCTTCAGGAAACAGAAAAATATCTGGAGGCAACGACATTTCAAGATATGGGAAAGGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCATTACAAATATCTTCATGTAGATCAATTTAAATCCTACAATCAATGCCTGAAAGGTGGAAGGTTGCCCGAGTGTATCAAAATACTTCAAGACATGGAAAAAGAAGGCTTATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTTCACCATACTTATTCCAAATCCCACGTTGAGTACATTTAACATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGCGCTTTTCAAGTCATGCGGCTTGTTCAGGAGGCTGGAATGAGAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCATCGAATGGTTAATACTGGAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATAACTGCATGTGGTCAGTCAGGAGCGGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGGGCTGAGCTACATCCTATAGAGCCTGATCATATTACAATTGGTGCTTTGATCAAGGCATGTACAAATGCTGGTCAGGTTGATCGGGCAAGAGAAGTGTATAAGATGATCCATGATTGTAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAGTGTATATCAAGATATGACCAAGAATGGAGTGCAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATATTAGGAGAAGCCAAGACACTGGGGTTAAGTGTTGGCATTGTGTCATATAGTTCGCTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCGTTGGAACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCCAACTGTTTCAACTGTGAATGCACTAATAACTGCACTGTGTGATGGGAAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGGATTAGGACTCTACCCAAACAACATTACATACTCCATACTTACGGCAGCAAGTGAAAGGAATGACGATTTAGAAATTGCCATCATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAAGTGCATAATTGGCATGTGTTTACGAAGAACTGCAGAGCCCTCTGCCCTTGATAGATCACTTTTGTCACATGACTCTAAACTGCCTCAAGTCAATAGTAAGTGGACAGCACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCTAGCATTGAACTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTAAAAAGCAGACTCATAAAAAACATAGGAGTATGTGCTGACTCATCAAGATCTTCGAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCTTTTGTATCCCTCAAAGGAAGTCCTATTATTGTAGATGTCAAGGAGTTGCACATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTAATGCCAAATGAGACGACACAAGTTCTCTCTTCCAAGGGGGAGAGAACCATTAACCTTGTGGGAAGGGTCGGACAAGCAGTGGCGGCATTGTTGAGAAGACTTGGACTACCCTACCAGGGAAATGAATCCAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAAAAGATGGTTACAGCCAAAACTCTCCAATTCTCTGAGTGGAAAACCAGGAGAGTTCAGCTCATTTCAGTCACGTCTAAGAGAAGGAATAAGCCATCAGCAGCGTAATATTCGCACTGGGAACCTATCATTGGATTAA 3303 42.84 MEVTFSSKPQSLMFNPCLPVNSSSSFSYSRLRFVRRQFLGGGHNLRPPDSLRTRRKCRKAGLFVQSPRYIFRATLSSNPALIVVAVVTFSAVSFIYMQLNRRKKNAVERSQPTKLALSQLGRDINWSADGEIMGFREHHGVFLEQNIAIKDRTEERSSNGEEETVLQLQKSVLSQEASVTESLQPSVSEVTTSKDSDSLLSDESEAADLSLLSDIFEPRVLQPLMFPNDMTDLPLNGSHVKSHSDLPVLVDATELPPVAGPLYSVYNPVTQHFQADGEPVKEEKFTSSNFLIEEPAREDIYMFYEDTESSSQTETSRTSHLYNRNFSSVMINGVSRGAELVPDDSLHIAGYVQRNVPVAYKEGSSGNRKISGGNDISRYGKGKEPSLHKGKVVNGLPYPNGKHVHYKYLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKSKKAVQEAFQFTILIPNPTLSTFNMLMSVCASSQDSDSAFQVMRLVQEAGMRADCKLYTTLISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALIKACTNAGQVDRAREVYKMIHDCKIKGTPEVYTIAVNCCSQSCDWDFASSVYQDMTKNGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGLSVGIVSYSSLMGACSNAKNWQKALELYEDLKSMKLRPTVSTVNALITALCDGKQLQMAMDILTEMKGLGLYPNNITYSILTAASERNDDLEIAIMLLSQAKEDGIVPTLTMYKCIIGMCLRRTAEPSALDRSLLSHDSKLPQVNSKWTAQALMVYREIIEAGIVPSIELLSQVLGCLQIPHDPALKSRLIKNIGVCADSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIIVDVKELHIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILMPNETTQVLSSKGERTINLVGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALKRWLQPKLSNSLSGKPGEFSSFQSRLREGISHQQRNIRTGNLSLD 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3881106 3892650 + CmoCh20G007740.1 Cmo20g00774 405091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Cmo20g00774 1100 Pfam Pentacotripeptide-repeat region of PRORP 479 613 IPR033443 -
Cmo20g00774 1100 Pfam Pentacotripeptide-repeat region of PRORP 626 767 IPR033443 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 656 689 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 761 793 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 479 512 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 725 758 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Cmo20g00774 1100 TIGRFAM PPR: pentatricopeptide repeat domain 621 651 IPR002885 -
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 611 IPR002885 -
Cmo20g00774 1100 MobiDBLite consensus disorder prediction 179 195 - -
Cmo20g00774 1100 Gene3D Tetratricopeptide repeat domain 415 612 IPR011990 GO:0005515
Cmo20g00774 1100 Gene3D Tetratricopeptide repeat domain 613 723 IPR011990 GO:0005515
Cmo20g00774 1100 Gene3D Tetratricopeptide repeat domain 733 901 IPR011990 GO:0005515
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Cmo20g00774 1100 MobiDBLite consensus disorder prediction 179 201 - -
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 723 757 IPR002885 -
Cmo20g00774 1100 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 169 1100 - -
Cmo20g00774 1100 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Cmo20g00774 1100 Pfam Pentatricopeptide repeat domain 781 839 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00774 - - - csv:101204147 1850.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00330 Cmo20g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00774 Cmo-Chr20:3881106 Cmo08g00468 Cmo-Chr8:2892177 2.21E-27 dispersed
Cmo02g00330 Cmo-Chr2:1703925 Cmo20g00774 Cmo-Chr20:3881106 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00774 Cmo_Chr20 FPKM 0.0 0.0 0.0 0.0 8.661576 9.089821 9.263895 0.0 0.0 0.0