Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00798 ATGGGAATTCGTTTGCTTTCGATACTCCTTGGTGCTGCTAAGCAAATTCTCAAGATGCAGTCTGTTTCTGTAGTATGTCAGTCAAATGTTCCCAAAGGCCACATTCCGGTTTACGTAGGAGAAACCGAGAGGAAGCGGTTTTTTGTTCCGATATCGTACTTGAGTCATCCTTCGTTCGTGGACTTGCTCGATAGGGCTGAAGAAGAGTTTGGATTCAGCCAACCAACTGGAGGTTTGACGATTCCCTGCAAAGAAGAAGCCTTCATTGATTTCCTTAAGGAAACTGATTTCATACTGATTACCAAACGAATACAAAAACAGCCAAACACCCCGCCAATTCAAGAGTGCCGTACAATCTACGATTTCCAGATTCATCGCAAGAGCTCAACCATTCGAAGTCAGTACTTGACTGTTCTTTCATTTCAATCAATTTTAGACATGGGAATTCGTCTACCTTCTCTTCTCTTTAGTGCCAAACAAATTCTGAAGACACAGTCAGTATCTGTACGAGGTCAATCCAACGTACCCAAAGGTCACATTGCAGTATACGTGGGAGAAATTCAGAGGAAGCGGTTTTTGGTTCCAATATCTTACTTGAACCATCCTTCATTTGTAAATTTGCTCAGTAGGGCTGAAGAAGAGTTTGGATTCAACCATCCAACAGGAGGTTTGACCATTCCCTGCAATGAAGAAGCCTTCATAGATGTCACCTCCAGACTATCTTTCTCAATCTTTCATCTCAAGCAAATGGGGATTCGATTACTATCTTTGGTTCCTCATGCCAAGCAAATCTTGAAGATGCAGCCAGGTTTTACCAAAAACCAGCTGGATGTTCCAAAAGGCCATGTGGCAGTTTATGTGGGAGAGATTCAAAGGAAGCGGTTTGTGGTTCCGATATTTTACTTAAACCAACCATTGTTCCAGCAACTACTCAGGCACGCAGAGGAGGAATTTGGCTTCCATCATCCACAAGGGCGCCTGACAATTCCTTGCAAAGAAGATGCCTTCATCGAACTCACTTCTAGATTGCAAGCATTTTGA 1041 42.94 MGIRLLSILLGAAKQILKMQSVSVVCQSNVPKGHIPVYVGETERKRFFVPISYLSHPSFVDLLDRAEEEFGFSQPTGGLTIPCKEEAFIDFLKETDFILITKRIQKQPNTPPIQECRTIYDFQIHRKSSTIRSQYLTVLSFQSILDMGIRLPSLLFSAKQILKTQSVSVRGQSNVPKGHIAVYVGEIQRKRFLVPISYLNHPSFVNLLSRAEEEFGFNHPTGGLTIPCNEEAFIDVTSRLSFSIFHLKQMGIRLLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPIFYLNQPLFQQLLRHAEEEFGFHHPQGRLTIPCKEDAFIELTSRLQAF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3939239 3944478 - CmoCh20G007980.1 Cmo20g00798 405115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00798 346 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 147 241 IPR003676 GO:0009733
Cmo20g00798 346 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 91 IPR003676 GO:0009733
Cmo20g00798 346 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 147 241 - -
Cmo20g00798 346 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 1 91 - -
Cmo20g00798 346 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 250 344 - -
Cmo20g00798 346 Pfam Auxin responsive protein 253 342 IPR003676 GO:0009733
Cmo20g00798 346 Pfam Auxin responsive protein 14 92 IPR003676 GO:0009733
Cmo20g00798 346 Pfam Auxin responsive protein 159 239 IPR003676 GO:0009733
Cmo20g00798 346 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 250 344 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00798 - - K14488 vri:117913455 249.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo19g00723 Cmo20g00798 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00340 Cmo-Chr2:1734203 Cmo20g00798 Cmo-Chr20:3939239 3.64E-130 dispersed
Cmo20g00798 Cmo-Chr20:3939239 Cmo02g00349 Cmo-Chr2:1750420 2.39E-34 dispersed
Cmo20g00794 Cmo-Chr20:3930792 Cmo20g00798 Cmo-Chr20:3939239 1.58E-15 proximal
Cmo20g00798 Cmo-Chr20:3939239 Cmo20g00805 Cmo-Chr20:3960077 6.41E-38 proximal
Cmo19g00723 Cmo-Chr19:7520560 Cmo20g00798 Cmo-Chr20:3939239 1.86E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g72 . . . . . . . . Cmo19g00723 . . . . . Sed05g2259 . . Bhi05g01764 Tan02g0724 Cmetu01g0370 . . . . Cla02g00468 Cam02g0475 Cec02g0476 . Clacu02g0479 Cmu02g0474 Cre02g0805 . . . . . . . Cme01g01307 . . . Bda14g00593 . . Bma03g00584 . Sed05g3570 . Cmo20g00798 . . . . . . Bhi10g01912 Tan05g1211 Cmetu11g0537 . . . . . . . . . . . Lsi11g01161 . . Cme11g00434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00798 Cmo_Chr20 FPKM 0.300489 0.524359 0.443508 0.265834 0.870777 0.596585 0.670035 0.348146 0.507476 0.178222