Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00819 ATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGATGCTATGGTGGAGGAAGGTGGGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTCAAGAAGATGACGATTACGAAGAGTTTGAGAAAAATCGGCTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGATTTCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGCCGTTGAGCTTGCTATTCCGAATCAAAATCAAAATCAAAATCGAAATCCCACTTCTCAGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCCGTGTCTTTGAACCGCTCCAAACCGGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTTCCGGTCAAACCGAGGACGAAAAGGCCGAGACAATCTCGTCAAGCGAAATCCAACAGTTCTTCTCTCAACCAATCTTCGTCGTCGTCGTCCTTGTCTTCGTCCTCCGGTGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCAGCGAGAACGTGGACTATTTGAACGTCTCCGGCGAGCCAACGAAGAAGCAGAGGAAAAAGTCGTCGTCGTCGGCGACGGCGACGGCAGCGGCGGCGGTTCTTCAACCCGTAGGCCCGACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTTGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACGCTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGACTTGGCCCCAATGGTCCCGAGTTACTAA 1053 53.09 MECLEAKALKSSFHWELAMKFAQPDAMVEEGGCSNGADLVAGEDFEVDEFLNFSNGDFEHGSALRVQEDDDYEEFEKNRLSVSPYSNQSGGISTAGEEGSKAVVAVELAIPNQNQNQNRNPTSQGDALADLEWVSQFVDDSGSEYSCAAVSLNRSKPEKKLTGAVISCLPTSFPVKPRTKRPRQSRQAKSNSSSLNQSSSSSSLSSSSGVSSAAPWFIFSDASENVDYLNVSGEPTKKQRKKSSSSATATAAAAVLQPVGPTGQIPRRCSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSY 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4050695 4052188 - CmoCh20G008190.1 Cmo20g00819 405136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00819 350 MobiDBLite consensus disorder prediction 186 209 - -
Cmo20g00819 350 ProSiteProfiles GATA-type zinc finger domain profile. 267 299 IPR000679 GO:0006355|GO:0043565
Cmo20g00819 350 PANTHER GATA TRANSCRIPTION FACTOR 2 350 - -
Cmo20g00819 350 CDD ZnF_GATA 268 325 IPR000679 GO:0006355|GO:0043565
Cmo20g00819 350 ProSitePatterns GATA-type zinc finger domain. 269 294 IPR000679 GO:0006355|GO:0043565
Cmo20g00819 350 MobiDBLite consensus disorder prediction 172 209 - -
Cmo20g00819 350 Pfam GATA zinc finger 269 302 IPR000679 GO:0006355|GO:0043565
Cmo20g00819 350 PANTHER GATA TRANSCRIPTION FACTOR 2 350 - -
Cmo20g00819 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 264 326 - -
Cmo20g00819 350 SMART GATA_3 263 313 IPR000679 GO:0006355|GO:0043565
Cmo20g00819 350 Gene3D - 262 336 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00819 - - - cmos:111448191 637.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00367 Cmo20g00819 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00703 Cmo-Chr16:3498974 Cmo20g00819 Cmo-Chr20:4050695 1.17E-50 dispersed
Cmo20g00819 Cmo-Chr20:4050695 Cmo05g00609 Cmo-Chr5:3045969 1.56E-37 dispersed
Cmo02g00367 Cmo-Chr2:1855553 Cmo20g00819 Cmo-Chr20:4050695 1.18E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11761 PF00320 GATA 8.60E-15 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00819 Cmo_Chr20 FPKM 291.118958 336.982056 91.608368 95.214806 50.255569 39.137875 48.069111 146.301941 139.668396 144.766006