Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00825 ATGAAGATCCGCTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGGCAATTCACCGCCGTCGTGCGATATCTGCCAGGTACGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGCGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCCAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAAGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA 648 51.7 MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTGNSPPSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTVSGGGSDESAEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4095081 4095728 - CmoCh20G008250.1 Cmo20g00825 405142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00825 215 MobiDBLite consensus disorder prediction 107 126 - -
Cmo20g00825 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo20g00825 215 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Cmo20g00825 215 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Cmo20g00825 215 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Cmo20g00825 215 MobiDBLite consensus disorder prediction 107 127 - -
Cmo20g00825 215 CDD Bbox1_BBX-like 5 47 - -
Cmo20g00825 215 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 214 - -
Cmo20g00825 215 Gene3D Classic Zinc Finger 1 102 - -
Cmo20g00825 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 214 - -
Cmo20g00825 215 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo20g00825 215 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cmo20g00825 215 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01107 Cmo-Chr11:6193606 Cmo20g00825 Cmo-Chr20:4095081 9.07E-67 dispersed
Cmo17g00588 Cmo-Chr17:6236889 Cmo20g00825 Cmo-Chr20:4095081 1.88E-32 dispersed
Cmo01g02006 Cmo-Chr1:14141132 Cmo20g00825 Cmo-Chr20:4095081 7.67E-48 wgd
Cmo12g00380 Cmo-Chr12:2352746 Cmo20g00825 Cmo-Chr20:4095081 1.26E-50 wgd
Cmo19g00699 Cmo-Chr19:7382490 Cmo20g00825 Cmo-Chr20:4095081 4.52E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11762 PF00643 zf-B_box 5.50E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00825 - - bhj:120089126 270.396