Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00837 ATGGCAGGTCAATCAAATTCAAGGAATGTATCCACAGATGTGAGTTTAGAACAGGTGAAGGAGGCTATGGATTCTCCCACAGTCTCATATAAGTCTCCTGCAAAATTGTCACTTTCATTGCCTTCCACTTCATCTTTGTCAACCTCTCCTTTGTCATCACAGAGCTATCTGCCTCCAACCAATTCATCCCTAACAAGATGTACCCATCAATCTCCAGGACATCAGCTGTTGCGTCAAGGTTCTGACAACCGAATCCGAGGATTAAAATCACCAGGTAGTTATTTAGCTTCTGAAGATAGACCAAGGCTTCCCTCTTGGAGCAACGAATCGGTCCGTGACTCACATGGAGGGTCTTCAGATTGTTGGTCTGTCCATGCCTTCTCTGAGCTCATGGCCACTTCTCATCGAGAAAGATGGTCTTTTGATAGCGACTCTTTCGGCTTTAACGGTGAGAAAATAGCCAGGTCTAGTAGTCGAATTTCAACCTCCTCAGTTGATTTGCAAACTTGCGGAGTTTGCTCAAAACTATTGACCGAGAAATCCTCATGGAGTAGCCAAAGGATCATTGCTAACAACGAGCTTTCTGTTGCTGCTGTACTAACCTGTGGACATGTTTATCATGCCGACTGCCTGGAGAGTATGACACCCGAGATTTACAAGTACGACCCCGCTTGTCCCGTTTGTACCTTCGGGGAGAAGCACACGCAGAAGCTGTCCGAAAAGGCGCTTAAAGCTGAAATGGACTGGAAGAGTCTATACAAGAGATCCAAAAACTGTAATGCAGATAGCCATTTTGAAGCAAACAATCCTTTCAAAAACCATGCCCGTCTCGAAAAGGGCTCTAGAATGTCTGCGAGTTCTAGCACGAGAAGCTCCTCAGGAAAGCCGTTCTTGAAACGGCACTTCTCCTTCGGCTCGAAGGGATCTTCTAGAGTGATGTCTGATAATCATCACTCCACAAGAAGGAAAGCTCTGTTCCGTGGTCCATTGCAGGCAGCGAAATGGTGCTGCTCCCTCGATCCGGGTGCCTTCCAGGAATTGTTTGTAGTGTTTGAATGTTTCATGAAACAGGAATTCTGCGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCATGTGTTCTGCCAGTGGCTTCCGGTGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGAACCTTCATCAATGGCGAATGTACGTGACGAGTTCGGCAACCCGGTCCAGCTGACGGACGAACGTGGGAACCCGGTTCAGCTGACTGACGAATTCGGCAACCCTGTCCAACTCACTGGAGTTGCCACCACTGGGTCCCAGCCGGTTGGGAACCCGGTTCAGATGAGTGAGGAATTGGGCAACCCCATGCACCCGACCGGAGTTTCCACCACTGGGTTCAGCCCCGTTGGGAACCCGGTTCAGATGAGTGAGGAATTGGGCAACCCCATGCACCCTACTGGAGTTGCCACCACTGGGTCCAAGCCCGTGTCGAGTGGCGGGGACTCAGAGGACGACGGGCAAGGCGGGAGGAGGAAGAAGAAGAAGGGGTTGACGCAGAAGATAAAGGAGAAGTTAACAGGAAAACACAAGGAGGCCGGGACGACGACGACGACAACGGGGGCGGGGCACCACCAGAGTACCACCGTGACATCGACGGTGGACGTCGAACACCAAGAACATGTCCCCCCTCTCGTGCTCGCTACGATGTTCTCTCTTTCGCGTTCAATTTCTCAATCCGCCACCAATTTCCTCTCTCTTTCGACCCCTGCAATTCCCTCTAAACCCACCTCTCTTTTGTCCCATTTCTCCACTTTCTCACTACAATCGTCTCCTTCCCTCTCCGTTTCTCTCCCTTGCCGCCGTTACCAGTTCGGTTCTTCAGTAATGTCGTCCAATTCCCAGTTCTCTAACATTGTGCACACTTCCATTGACATGGGTTTTGATGATCATGACCTCGATCGATTTGCCGAAGTTGCGAACAGGGTCGCGGATGCTGCTGGGGAAGTGATTCTGAAGTACTTTCGCAAGAAATTTGAGATCATTGATAAGGCGGATTTCAGTCCTGTGACTGTGGCTGATCAAGCAGCGGAGGAATCTATGGTTTCAGTTTTAATGGAGAACTTTCCTTCTCATGCTATATATGGTGAGGAAAAAGGATGGAGATGCAAAGAGAATTCAGCTGATTTTGTTTGGGTTTTAGATCCAATAGATGGCACAAAGAGTTTTATTACTGGAAAACCCCTATTTGGCACTCTGATTGCATTGTTACATAGAGGGAAACCAGATGGTGTTAATCTTCAGATTCTGGGTATCATTGATCAGCCTGTTCTGAGAGAAAGATGGATAGGAATAAGTGGGAGGAGAACTGCATTGAATGGGCAAAATGTATCTACAAGATCTTGTTCAGACATATCACAGGCCTATTTATATACTACAAGCCCTCATCTATTTAGTGGAGAAGCCGATGAGGCATTTGCTCGTGTGAGGAACAAGGTAAAAGTTCCCCTGTATGGTTGTGACTGCTATGCGTATGCCCTTTTAGCATCTGGGTTTGTAGATCTTGTCATTGAATCTGGGCTCAAGCCCTATGATTTTCTCTCTCTAATACCCATAATCAAAGGGGCTGGTGGTGTGATAACCGATTGGAAAGGAGAGGAGCTTTATTGGGAAGCCTTGCCTAATTCCCCTGCAACAAGTTTTAATGTGTTAGCAGCTGGGGATAAAGTTATCCATCAACAAGCCCTTGAATCATTAAGATGGGACTGA 2802 47.86 MAGQSNSRNVSTDVSLEQVKEAMDSPTVSYKSPAKLSLSLPSTSSLSTSPLSSQSYLPPTNSSLTRCTHQSPGHQLLRQGSDNRIRGLKSPGSYLASEDRPRLPSWSNESVRDSHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSRISTSSVDLQTCGVCSKLLTEKSSWSSQRIIANNELSVAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRSKNCNADSHFEANNPFKNHARLEKGSRMSASSSTRSSSGKPFLKRHFSFGSKGSSRVMSDNHHSTRRKALFRGPLQAAKWCCSLDPGAFQELFVVFECFMKQEFCGIYFTQDWVSLPCVLPVASGGAVANRVALEACVQARNEGRDLAREEPSSMANVRDEFGNPVQLTDERGNPVQLTDEFGNPVQLTGVATTGSQPVGNPVQMSEELGNPMHPTGVSTTGFSPVGNPVQMSEELGNPMHPTGVATTGSKPVSSGGDSEDDGQGGRRKKKKGLTQKIKEKLTGKHKEAGTTTTTTGAGHHQSTTVTSTVDVEHQEHVPPLVLATMFSLSRSISQSATNFLSLSTPAIPSKPTSLLSHFSTFSLQSSPSLSVSLPCRRYQFGSSVMSSNSQFSNIVHTSIDMGFDDHDLDRFAEVANRVADAAGEVILKYFRKKFEIIDKADFSPVTVADQAAEESMVSVLMENFPSHAIYGEEKGWRCKENSADFVWVLDPIDGTKSFITGKPLFGTLIALLHRGKPDGVNLQILGIIDQPVLRERWIGISGRRTALNGQNVSTRSCSDISQAYLYTTSPHLFSGEADEAFARVRNKVKVPLYGCDCYAYALLASGFVDLVIESGLKPYDFLSLIPIIKGAGGVITDWKGEELYWEALPNSPATSFNVLAAGDKVIHQQALESLRWD 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4178136 4187836 - CmoCh20G008370.1 Cmo20g00837 405154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00837 933 PRINTS Inositol monophosphatase superfamily signature 743 759 IPR000760 GO:0046855
Cmo20g00837 933 PRINTS Inositol monophosphatase superfamily signature 798 821 IPR000760 GO:0046855
Cmo20g00837 933 PRINTS Inositol monophosphatase superfamily signature 699 719 IPR000760 GO:0046855
Cmo20g00837 933 PRINTS Inositol monophosphatase superfamily signature 872 896 IPR000760 GO:0046855
Cmo20g00837 933 PRINTS Inositol monophosphatase superfamily signature 721 737 IPR000760 GO:0046855
Cmo20g00837 933 MobiDBLite consensus disorder prediction 498 512 - -
Cmo20g00837 933 CDD Bacterial_IMPase_like_1 667 927 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 472 559 - -
Cmo20g00837 933 Pfam Inositol monophosphatase family 663 903 IPR000760 GO:0046855
Cmo20g00837 933 MobiDBLite consensus disorder prediction 1 18 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 278 299 - -
Cmo20g00837 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 230 IPR013083 -
Cmo20g00837 933 Pfam Dehydrin 508 560 IPR000167 GO:0009415
Cmo20g00837 933 MobiDBLite consensus disorder prediction 103 117 - -
Cmo20g00837 933 SUPERFAMILY RING/U-box 169 229 - -
Cmo20g00837 933 Gene3D - 654 808 - -
Cmo20g00837 933 PANTHER EXPRESSED PROTEIN 3 327 - -
Cmo20g00837 933 SUPERFAMILY Carbohydrate phosphatase 663 930 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 543 559 - -
Cmo20g00837 933 ProSiteProfiles Zinc finger RING-type profile. 170 229 IPR001841 -
Cmo20g00837 933 SMART ring_2 170 228 IPR001841 -
Cmo20g00837 933 TIGRFAM his_9_HisN: histidinol-phosphatase 668 930 IPR011809 GO:0004401
Cmo20g00837 933 SUPERFAMILY RuBisCo, C-terminal domain 356 410 IPR036376 GO:0000287
Cmo20g00837 933 Gene3D - 809 932 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 30 78 - -
Cmo20g00837 933 ProSitePatterns Inositol monophosphatase family signature 1. 743 756 IPR020583 -
Cmo20g00837 933 PANTHER BNAA09G43140D PROTEIN 3 327 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 1 117 - -
Cmo20g00837 933 CDD RING-H2 195 228 - -
Cmo20g00837 933 MobiDBLite consensus disorder prediction 280 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00837 K18649 IMPL2; inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase [EC:3.1.3.25 3.1.3.93 3.1.3.15] - csv:101205614 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00548 Cmo-Chr10:2468355 Cmo20g00837 Cmo-Chr20:4178136 2.73E-12 dispersed
Cmo11g00508 Cmo-Chr11:2448918 Cmo20g00837 Cmo-Chr20:4178136 4.34E-12 dispersed
Cmo17g00512 Cmo-Chr17:4942545 Cmo20g00837 Cmo-Chr20:4178136 5.33E-07 dispersed
Cmo18g00599 Cmo-Chr18:5597727 Cmo20g00837 Cmo-Chr20:4178136 2.10E-19 dispersed
Cmo20g00837 Cmo-Chr20:4178136 Cmo13g00419 Cmo-Chr13:5205366 9.65E-14 dispersed
Cmo04g00813 Cmo-Chr4:4056902 Cmo20g00837 Cmo-Chr20:4178136 1.13E-13 transposed
Cmo12g00737 Cmo-Chr12:5686283 Cmo20g00837 Cmo-Chr20:4178136 1.29E-09 transposed
Cmo15g01112 Cmo-Chr15:7645592 Cmo20g00837 Cmo-Chr20:4178136 2.26E-14 transposed
Cmo16g00689 Cmo-Chr16:3410635 Cmo20g00837 Cmo-Chr20:4178136 1.16E-12 transposed
Cmo18g01158 Cmo-Chr18:11783071 Cmo20g00837 Cmo-Chr20:4178136 1.21E-16 transposed
Cmo19g00693 Cmo-Chr19:7319650 Cmo20g00837 Cmo-Chr20:4178136 1.30E-23 wgd
Cmo02g00384 Cmo-Chr2:1969171 Cmo20g00837 Cmo-Chr20:4178136 5.04E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g341 . . . . . . . . . . . Cma20g00827 . Car20g00712 . . . . . . . . . . . . . . . . . Cone12ag1167 Cone8ag1215 . . Lsi10g00398 . Chy11g00353 . Blo04g00524 . . . . . . . Sed01g0282 . Cmo20g00837 . . . . Cpe16g00262 . Bhi10g01970 Tan05g1265 Cmetu11g1211 . Hepe08g0993 . . . . . . . . . . Csa02g01288 . Cme11g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011027 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00837 Cmo_Chr20 FPKM 13.951736 17.023014 15.786098 17.802391 15.626579 15.425227 16.307289 14.840385 15.01868 14.431746