Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00842 ATGTCTGGACCATTGGATCGATTCGCCAGACCATGTTTTGAAGGTTTCTCTGGTAGTGATGAAAGAAAAGAAAGGAAATCTGATTTTGAAAACTCTGAGGATGAAAGGAGGACTAGAATTGGGTCTATAAAGAAGAAAGCTCTAAATGCATCTTCCAAATTTAAACATTCCCTCAAGAAGAAGAGCAGCAGGAGAAAAAGTGATGGTCGGGTCAGTTCTGTTTCTATTGAGGATGTTAGGGATGTTGATGAGTTGCGGGCTGTTGATGCGTTTCGTCAAGCACTAATAATGGAGGAATTACTTCCTGAAAAACACGATGATTATCACATGATGTTGAGGTTTTTAAAAGCTCGGAAATTTGATATCGAAAAAGCTAAACATATGTGGGCTGATATGCTTAATTGGAGGAAGGAGTTTGGTGTTGACACAATAGGTGAAGATTTTGAATTCAAAGAGAAAAATGAAGTTCTGAGGTACTATCCTCATGGATATCATGGGGTGGATAAAGAAGGAAGACCTGTTTACATCGAAAGGTTGGGGAAAGTGGATCCAAACAAACTTATGCAAGTGACAACCATGGACCGATATATAAAGTACCACGTACAAGAGTTTGAGAAAAGTTTTTCTATCAAGTTTCCAGCTTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAATTTCACGAAGTCTGCTAGGGAACTCATCATGCGGCTGCAGAAAGTTGATGGTGACAATTACCCGGAAACTCTCAGCCAAATGTACATTATCAATGCTGGTCCTGGATTCCGGATGCTATGGAACACCGTGAAGTCTTTCCTTGACCCCCGAACAACATCTAAAATTCATGTTCTCGGGAACAAGTATCAAAACAAATTACTTGAAGTAATTGATTCCAGTGAGTTGCCGGAATTTCTGGGTGGAAATTGTACCTGTGCAGATTCGGGGGGGTGTCTTCATTCAGACAAGGGGCCCTGGAGAAACCCAGAAATTTTGAAGATGATTCTTAATGGTGAAGCACGACAAGCCAGACAGGTTGTAAAAGTTCTAAATAGCGAGGGGAAGGTTGTTGCATATGCTAAACCACATTACCCAATGGTGAAAGGTAGCGATACATCCACTGCCGAGTCGGGATCTGAAGCTGAAGAGATCGCTTCTCCTAATGCAATGAAGAACTATTCTCATCTTCGGTTGACTCCTGTTCGAGAAGAAGCAAGAGTTGGTGGTAAAGCAGGCTTTGTTGCTACCTTCTCTGGGTATGATGAATATGTTCCCATGGTTGACAAAGCTGTTGATGCTGGATGGAAGAAGCAAGGTTCACTCCAGCGTCCTAGCGCCTTTAAAGGGGTTCTTCCACTGCCTGATACTCGAAAAGCACCCGAAGCACTTCATACTCGAATGTTGGTAGTACTCATGGGGTTCTTCATAGCCATTTGGGCTTTCCTCCGTTCACTGGCATGCCGGATGAGTGGGAAGAAATTGTCTATGGGGAGTCAAAACAACCCAGAATTATTGTCCTCTGATCAAACAGCCACAGAGGAGAATCGCTCCCCTTCACCGATTGCTAAAGTTACGGAAGCAGAACTACTCTCAAATCTAGTAAAGAGGCTGGGCGAGCTGGAGGAGAAGGTCGATACACTTCAATCGAAACCATCGGAAATGCCATACGAGAAAGAGGAACTATTAAATGCTGCTGTCTGCCGTGTCGATGCTTTAGAAGCAGAGCTGATTGCTACCAAGAAGGCTTTGCACGAAGCGTTGATGAGGCAAGAAGAACTGCTCGCATACATCGATAGCCAAGAGGAAGCGAAGTTGCGGGTAAGCTAA 1863 43.59 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVDELRAVDAFRQALIMEELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLNWRKEFGVDTIGEDFEFKEKNEVLRYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYIKYHVQEFEKSFSIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEVIDSSELPEFLGGNCTCADSGGCLHSDKGPWRNPEILKMILNGEARQARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEEIASPNAMKNYSHLRLTPVREEARVGGKAGFVATFSGYDEYVPMVDKAVDAGWKKQGSLQRPSAFKGVLPLPDTRKAPEALHTRMLVVLMGFFIAIWAFLRSLACRMSGKKLSMGSQNNPELLSSDQTATEENRSPSPIAKVTEAELLSNLVKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDSQEEAKLRVS 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4232680 4238504 + CmoCh20G008420.1 Cmo20g00842 405159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00842 620 MobiDBLite consensus disorder prediction 16 42 - -
Cmo20g00842 620 SUPERFAMILY CRAL/TRIO N-terminal domain 83 147 IPR036273 -
Cmo20g00842 620 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Cmo20g00842 620 SMART sec14_4 152 323 IPR001251 -
Cmo20g00842 620 MobiDBLite consensus disorder prediction 1 70 - -
Cmo20g00842 620 Coils Coil 581 601 - -
Cmo20g00842 620 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 618 - -
Cmo20g00842 620 MobiDBLite consensus disorder prediction 49 66 - -
Cmo20g00842 620 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Cmo20g00842 620 CDD SEC14 153 321 IPR001251 -
Cmo20g00842 620 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Cmo20g00842 620 Coils Coil 542 562 - -
Cmo20g00842 620 Gene3D - 140 351 IPR036865 -
Cmo20g00842 620 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Cmo20g00842 620 MobiDBLite consensus disorder prediction 506 531 - -
Cmo20g00842 620 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Cmo20g00842 620 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 618 - -
Cmo20g00842 620 Gene3D - 44 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00842 - - - cmo:103499694 1110.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00389 Cmo20g00842 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01085 Cmo-Chr1:9007990 Cmo20g00842 Cmo-Chr20:4232680 1.53E-162 dispersed
Cmo09g01049 Cmo-Chr9:5653010 Cmo20g00842 Cmo-Chr20:4232680 2.46E-170 dispersed
Cmo16g01193 Cmo-Chr16:8503803 Cmo20g00842 Cmo-Chr20:4232680 9.98E-114 dispersed
Cmo17g01233 Cmo-Chr17:9785017 Cmo20g00842 Cmo-Chr20:4232680 1.48E-17 dispersed
Cmo18g00608 Cmo-Chr18:7394942 Cmo20g00842 Cmo-Chr20:4232680 1.86E-24 dispersed
Cmo20g00842 Cmo-Chr20:4232680 Cmo20g00843 Cmo-Chr20:4240374 0 tandem
Cmo02g00389 Cmo-Chr2:2003406 Cmo20g00842 Cmo-Chr20:4232680 1.70E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00842 Cmo_Chr20 FPKM 0.0 0.0 4.927454 0.0 0.0 0.0 0.0 0.0 0.0 0.0