Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00843 ATGTGTGACAACATGTCGTCCGATCCTCTCGACCGACCGGGTAAAGGAGCCAACGAAGTCGAGATGTCGGAGGAAGAGAGAAAGACAAGGCTAGCATCTCTTAAGCAAAAAGCAATCAACGCCTCAAACAAGTTCAGACATTCAATGAAGAAGAAAAGCAGAAGAAACAGCAGCAGAGTGATGTCAATTTCCATAGAAGACGACATCGACGCAGAGGAATTACAAGCAGTAGACGCCTTCCGCCAAGCTCTCATACTAGAAGAGCTCCTCCCTTCAAAACATGACGACCATCACATGATGCTCAGGTTCTTGCGAGCTAGAAAGTTCGACATCGACAAGTCAAAGCAAATGTGGTCGGACATGCTCCAATGGCGCAAAGAGTTCGGATCCGACACAATAATGGAGGACTTTGAATTCAAGGAGATAGACGACGTGTTGAAGTATTATCCACAAGGACATCATGGAGTCGACAAAGATGGACGACCCGTGTACATCGAAAGGCTCGGCATGGTCGACTCGACCAAGCTCTTGGAAGTGACGACGATGGATAGATACGTGAATTACCATGTCCGTGAGTTCGAGAGGACCTTTGTTATGAAGTTCCCAGCTTGTTCTATTGCTGCTAAGAAGCATATTGATCAGAGCACGACCATCTTGGATGTCCAAGGCGTGGGACTCAAGAGCTTCAACAAATCTGCCCGGGAACTCATCCAGAGGCTGCAGAAGGTTGATGGTGACAACTATCCAGAGACATTGAACAGAATGTTCATCATCAACGCTGGATCTGGATTCAGGCTTCTATGGAACACTGTGAAATCGTTTCTTGACCCAAAAACGACAGCTAAAATCAATGTTCTTGGCAATAAGTATCAGAGCAAATTGCTCGAGATCATCGATGCTAGTGAACTTCCAGAGTTCTTGGGAGGTTCTTGCACCTGCGCCGACAAGGGTGGCTGTATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATCATTAAGATGGTTCAAAATGGTGAAGGAAAATGCAGGAGGAGGTCATTATCCAACGTTGAAGAGAAGACCATTTCTGAAGATGACAACACAGGAAGCAAGATAAGTGGTTCATCCAACTTAGAATCAGCTCCTGAGGCGGCGGTGGCGGCGGCGGTGGCAGAGTCTTGCACGTCCCCAAAGCAAGCAAAACCGTCCCCTGTTTCAGCAGCAGTGGAAGTTCAAATGTCGAAAAAGATGGATTGCGAGTATCAATATAACAAGTTCGTCCCTGTGGTCGATAAAAACATGGATCAAAATTGGGCAATTTCAAATGAAAAATACAATTTATCCAAAGACCCATTTGCAGTGCATGAAAACTACAAAGTCCCAGATGGTTTCAGCAACCAACTAGTTGGAGGAATAATGGCTGTGGTAATGGGAATAGTGACAATGGTCCGGCTAACTAGAACCATGCCAAAGAAGCTCACAGAGGCAGCCATCTACAGCAGCACGGTCTACTACGACGGTTCGATGCCGAGACATCCAGCGTTGCCGCCCCCCGCCGCCGTGCCTCTTAGCGACTACATGACAATGATGAAGCGCATGGCGGAGCTCGAAGAGAAAGTCAATGTCCTCAACATGAAACCGGCCGCCATGCCGGCTGATAAAGAGGAAATGCTCAACATTGCTTTGGGCAAAGTTGAAACTTTGGAACATGAATTGCAAGAAACTAAGAAGGCACTCGAGGAATCCCTTTCTCGAGCAGCCGAGCTCAGCAGCTACATCGAAAAGAAGAAGAAGAAGAAGATGATGGTGAACCCATTCCGCTGGGGAATGTGA 1815 47.27 MCDNMSSDPLDRPGKGANEVEMSEEERKTRLASLKQKAINASNKFRHSMKKKSRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIDKSKQMWSDMLQWRKEFGSDTIMEDFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGMVDSTKLLEVTTMDRYVNYHVREFERTFVMKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKSARELIQRLQKVDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGSCTCADKGGCMRSDKGPWNDPEIIKMVQNGEGKCRRRSLSNVEEKTISEDDNTGSKISGSSNLESAPEAAVAAAVAESCTSPKQAKPSPVSAAVEVQMSKKMDCEYQYNKFVPVVDKNMDQNWAISNEKYNLSKDPFAVHENYKVPDGFSNQLVGGIMAVVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMPRHPALPPPAAVPLSDYMTMMKRMAELEEKVNVLNMKPAAMPADKEEMLNIALGKVETLEHELQETKKALEESLSRAAELSSYIEKKKKKKMMVNPFRWGM 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4240374 4244697 - CmoCh20G008430.1 Cmo20g00843 405160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00843 604 MobiDBLite consensus disorder prediction 1 30 - -
Cmo20g00843 604 SMART sec14_4 141 312 IPR001251 -
Cmo20g00843 604 Coils Coil 520 540 - -
Cmo20g00843 604 SUPERFAMILY CRAL/TRIO N-terminal domain 67 137 IPR036273 -
Cmo20g00843 604 Gene3D - 34 128 - -
Cmo20g00843 604 SUPERFAMILY CRAL/TRIO domain 141 337 IPR036865 -
Cmo20g00843 604 SMART CRAL_TRIO_N_2 96 121 IPR011074 -
Cmo20g00843 604 Pfam CRAL/TRIO, N-terminal domain 93 120 IPR011074 -
Cmo20g00843 604 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 19 596 - -
Cmo20g00843 604 Gene3D - 129 340 IPR036865 -
Cmo20g00843 604 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 596 - -
Cmo20g00843 604 MobiDBLite consensus disorder prediction 14 30 - -
Cmo20g00843 604 Coils Coil 552 583 - -
Cmo20g00843 604 MobiDBLite consensus disorder prediction 351 371 - -
Cmo20g00843 604 Pfam CRAL/TRIO domain 147 309 IPR001251 -
Cmo20g00843 604 PRINTS Cellular retinaldehyde-binding protein signature 99 121 - -
Cmo20g00843 604 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Cmo20g00843 604 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 315 IPR001251 -
Cmo20g00843 604 CDD SEC14 142 309 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00843 - - - csv:101214906 1026.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00390 Cmo20g00843 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00389 Cmo-Chr2:2003406 Cmo20g00843 Cmo-Chr20:4240374 2.14E-27 dispersed
Cmo02g00390 Cmo-Chr2:2009831 Cmo20g00843 Cmo-Chr20:4240374 0 dispersed
Cmo03g00748 Cmo-Chr3:6314670 Cmo20g00843 Cmo-Chr20:4240374 0 dispersed
Cmo07g00464 Cmo-Chr7:2122300 Cmo20g00843 Cmo-Chr20:4240374 0 dispersed
Cmo20g00842 Cmo-Chr20:4232680 Cmo20g00843 Cmo-Chr20:4240374 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00843 Cmo_Chr20 FPKM 13.128452 14.570536 16.260788 16.583454 16.81638 17.180378 20.178741 7.639714 7.316799 9.233169