Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00846 ATGAAACTAGAGAATATTGGTTTAAGAGAAAGGGAGGAAGGCGACTTGGGACCCGTATACGGGTTTCAGTGGCGACACTTTGGTGCTAGGTTCGTCGATAACTTCGATGATCTCTTAAGTTTGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGACGTTATTAACAAGATAAAAAATAATCCCGATGATCGGAGGATCGTTCTTTCTGCGTGGAATCCATCTGATCTCAAACTGATGGCACTCCCGCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAACGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGATATGGGCCTTGATCTTGCTTACGGAGACTTCATACATGTGATCGGAGACGCTCATGTTTACCGTACTCACGTGCGGCCATTGCAGGAACAGCTTCAGAAACTCCCGAAACCGTTCCCTGTTTTGAAGATAAACCCCGAGAAGAAGGATATCGATTCGTTCGTGGCAGCTGATTTCGAGCTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTATAG 570 45.44 MKLENIGLREREEGDLGPVYGFQWRHFGARFVDNFDDLLSLYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIVLSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLDLAYGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPVLKINPEKKDIDSFVAADFELTGYDPHEKIAMKMAV 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4258644 4260582 + CmoCh20G008460.1 Cmo20g00846 405163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00846 189 CDD TS_Pyrimidine_HMase 12 142 IPR023451 -
Cmo20g00846 189 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 121 189 - -
Cmo20g00846 189 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 3 120 - -
Cmo20g00846 189 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 1 118 IPR036926 -
Cmo20g00846 189 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 119 189 IPR036926 -
Cmo20g00846 189 PANTHER THYMIDYLATE SYNTHASE 1 121 189 IPR045097 GO:0016741
Cmo20g00846 189 PRINTS Thymidylate synthase family signature 86 101 IPR000398 GO:0004799|GO:0006231
Cmo20g00846 189 PRINTS Thymidylate synthase family signature 104 130 IPR000398 GO:0004799|GO:0006231
Cmo20g00846 189 PRINTS Thymidylate synthase family signature 60 79 IPR000398 GO:0004799|GO:0006231
Cmo20g00846 189 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 3 189 IPR036926 -
Cmo20g00846 189 TIGRFAM thym_sym: thymidylate synthase 11 118 IPR000398 GO:0004799|GO:0006231
Cmo20g00846 189 PANTHER THYMIDYLATE SYNTHASE 1 3 120 IPR045097 GO:0016741
Cmo20g00846 189 Pfam Thymidylate synthase 11 120 IPR023451 -
Cmo20g00846 189 Pfam Thymidylate synthase 118 189 IPR023451 -
Cmo20g00846 189 ProSitePatterns Thymidylate synthase active site. 71 99 IPR020940 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00846 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 332.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00391 Cmo20g00846 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00846 Cmo-Chr20:4258644 Cmo02g00391 Cmo-Chr2:2017541 7.96E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0026211 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00846 Cmo_Chr20 FPKM 35.020203 39.640614 50.699356 48.621964 30.651402 35.649441 26.469576 287.125793 317.832794 291.769592