Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00852 ATGTCTGATCATATCACAAAGTCATACCAAGAAGAGAGTGGAACGTCAATGCGACCTTACCATTCAGTTTGGTTGTCTCACTGGGCACATTCAGGCTGCAAATCAGCGAATGGAGCCTGCAATAATTTATCGACCAGCAGTGAGTCTGGGGAAGAAAATTCTCAAACTAAGAAGCGCCCTTTGCTCGACGGTCCAATGCAAGCTACTCTCAATGGAAAACATGCCATTGGGTCTGGAGAAGTAGCTGGAGAAACTGCAGATTATCCCAACAATGAGAGTTTGACTGGGAGATCTAAGAAGAGAAGGAAAGAAAGGTTAGATTCTGAGCCCTTGCCTATGCTCAATGTTTCTCAGCATAGTGGGGGTAAACTGGGTATGAATATTGAACAGGCCACGGCTAGTCAAGGTGGAGCTTTGAAATTTCATACTGGTTCTGTCTCTGGGCACAAAACTTCGTCTCTGGATGGGAAGAGCCAATTGCCATCAGTTCCTGAAAGAGCTAAACCCAAGAAGGAAAAAATGACTTCCAAAGACATTAGAGTGTATCAACAGCAACATGAGAATTCCAATAAGCTTCTTAACAACAATGACTTAACCGTTTCACCACTTGTTGGAGATGAGGCTATGGGATCAGCTTCCAACTTCATTCCATATGGAATGAGTAATAGATTTCCATTCACCACATGTGAACGAAACATGACCGATGAACCAAGTTCCTATTTGTCATCCAAAAAACAGGTTGGAAATACTAATTTCCACACTTATTCTACTCTCTTTGTACAAGAGACAAAAATCAACCAACTTTTGGATTCAACCCAAGCTACAAATGCACTGTCAAGGCAGCACATGAGAACGTTCTTACTGCACGATCCCTCTTCACGCAATCTCGACCAACCAAAACCATACCCTATACAATGTGATACTAGGAAAAGTAGTTCTAATACCTTACCCGATCTAAGCCAGAGCAACCATGCAGACACTACCTTACCAGAATATTTATACCGTGGAGGTTACTCAATGCAGAGACTCCCATTTTCTGTTCATGACGTGGAAACTATGAGAATATGTACCACTGTAGACTCTGTTGGACAGGCGCTCAAGGGTCCTCCAAAGTTTTGTCAAACTACTCACCGTTTAATGATCACTAAAAAGACTGATGTTGACTTGTTTGAAGGTCAAGAGTTTAGAGGGGCAGTGGCATCCACCAATCTCAAAGAAAAAGCAACATGTGCACTTCTTAGTGCATCCACCAATTTTGGCAGACACGATCAGAATGATAATGAATTGACACAACCTTCTAGCTCCCTCTATGGAGAAAATGAAAATTTTGGAAATATGAGGTGTGCGACTTCTTTGAGCAATGAATCATCTGGAACTGAAACTGATATTATGGATATGGATGCATACCAAGAGAACCATTTGAGGGGCTCGGATGCATCACAAGCAGTTAAGGAGTTGAGGAGTTCAAAATCACCATTGCTCTCTGTGAGTGCAGCTAGTTCGGTTAGAAATCAAATCGGAGACCGGCTTCCGAAGAAACGATTCCTTGACATAAATGAAAAGCCACCCAATTATTCTACTTCTGCGAGCTTGATGGACAACGGGGAGTCGAGTACCTCTAAAACACAAACTATGGATGCAGAACACCTCCTTCCAAGTGCCGTGCAGCCGAGGTTTTCAAACTCTACGGCCCCTCCAAATGACTCTTCTAAACGGGAGATAGACAATGAGTGGGTTAAACGTCTTAGGCCATCTGCCTCAGAGTCGGTTCATGATACGAAGAGCACGAAAAAGGAAGAATCTTCCTGTGATAAAGCCAATCAGCTCTTTAGTAAAATGAAACGCCGCTCAACCAGCTCTGACCCCTCTAGTGGTCCATTCCAAGGACAAGAACAATTGGCAATTGGTCAACCAGCAACTACAATAAAGAATAGCGATGTATGCAGCAACTTAGGATTAAAGAATCGAGAAATGATACTCTCCAACCCCTGGATTCGGAGATTGTGTCTTAATAAACCGGCGCCTTCTGAAACAAATCTTGAAACTGCAGCGATTCACAAATCGCAGGGCTCAAAACCAACGTTACTTCAGCCATTTCCCAGTATTGCTGCCATGGCATTGATGGGCAAGACGATGACTGGGGTTCGGCCACGCGAGTTCAGCAGAAAAGGCTCTTCTTTAGTTTGGAACACCGAGGATATTTAA 2205 43.36 MSDHITKSYQEESGTSMRPYHSVWLSHWAHSGCKSANGACNNLSTSSESGEENSQTKKRPLLDGPMQATLNGKHAIGSGEVAGETADYPNNESLTGRSKKRRKERLDSEPLPMLNVSQHSGGKLGMNIEQATASQGGALKFHTGSVSGHKTSSLDGKSQLPSVPERAKPKKEKMTSKDIRVYQQQHENSNKLLNNNDLTVSPLVGDEAMGSASNFIPYGMSNRFPFTTCERNMTDEPSSYLSSKKQVGNTNFHTYSTLFVQETKINQLLDSTQATNALSRQHMRTFLLHDPSSRNLDQPKPYPIQCDTRKSSSNTLPDLSQSNHADTTLPEYLYRGGYSMQRLPFSVHDVETMRICTTVDSVGQALKGPPKFCQTTHRLMITKKTDVDLFEGQEFRGAVASTNLKEKATCALLSASTNFGRHDQNDNELTQPSSSLYGENENFGNMRCATSLSNESSGTETDIMDMDAYQENHLRGSDASQAVKELRSSKSPLLSVSAASSVRNQIGDRLPKKRFLDINEKPPNYSTSASLMDNGESSTSKTQTMDAEHLLPSAVQPRFSNSTAPPNDSSKREIDNEWVKRLRPSASESVHDTKSTKKEESSCDKANQLFSKMKRRSTSSDPSSGPFQGQEQLAIGQPATTIKNSDVCSNLGLKNREMILSNPWIRRLCLNKPAPSETNLETAAIHKSQGSKPTLLQPFPSIAAMALMGKTMTGVRPREFSRKGSSLVWNTEDI 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4280918 4284937 - CmoCh20G008520.1 Cmo20g00852 405169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00852 734 MobiDBLite consensus disorder prediction 144 177 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 94 109 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 570 605 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 479 502 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 144 159 - -
Cmo20g00852 734 PANTHER OS01G0687300 PROTEIN 1 733 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 521 569 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 43 118 - -
Cmo20g00852 734 MobiDBLite consensus disorder prediction 518 605 - -
Cmo20g00852 734 PANTHER OS01G0687300 PROTEIN 1 733 IPR037476 GO:0010099
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00852 - - - csv:101215624 1103.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00395 Cmo-Chr2:2036941 Cmo20g00852 Cmo-Chr20:4280918 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g361 . Blo15g00705 . . Bpe07g00423 . . Bma12g00506 . . . . Car02g00253 Car20g00728 . . . . . . . . . . . . . . . . . . . Cone3ag1168 Cone10ag0973 Lsi10g00381 . Chy11g00370 . Blo04g00514 . . . . . . . Sed05g3614 . Cmo20g00852 . . . . Cpe16g00249 Cpe05g01267 Bhi10g01991 Tan05g1289 Cmetu11g1174 . Hepe08g1005 . . . . . . . . . . Csa02g01273 . Cme11g00126
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005955 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00852 Cmo_Chr20 FPKM 156.91188 158.469223 241.973129 238.79071 177.94162 170.678436 204.839386 301.706055 333.056976 371.740143