Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00854 ATGGGCAAAGTCAAGGGGAAGCATCGTTTGGACAAGTACTATCGCCTTGCTAAAGAGCATGGCTATCGTTCTCGTGCCTCATGGAAACTCGCCCAGCTCGACTCCAAATACAACTTCCTCCGCTCCTCCCATGCCGTTCTCGATCTCTGCGCCGCCCCCGGTGGTTGGATGCAAGTCGCCGTCGAGCGGGTTCCCGTCGGTAGCCTCGTTGTCGGTGTCGATTTGGTTCCCATTGCGCCCGTTCGCGGTGCCATTGCTATCGAGCAGGATATCACGAAGCCGGAATGCAAGGCGAGGCTCAAGAAGATTATGAACGAGAAAGGGTGCGCTGCTTTTGATTTGATCTTGCACGATGGGTCGCCCAATGTTGGTGGGGCTTGGGCGCAGGAGGCCATGAGCCAGAATTCGTTGGTTATAGATTCTGTCAAATTAGCTACTCAGTTATTGGCTCCAAAGGGTGCATTTGTTACCAAGGTTTTCAGGTCACAAGATTACAGTTCTGTCCTATATTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTCGACAAACCAGCAGCAAGTCGATCTGCATCTGCAGAAATATATGTTTTGGGTCTTAGATATACGGCTCCTGCAAAGATTGATCCACGACTTCTTGATGTAAAGCACCTGTTTCAAGGATCTGTAGAATCCCAACGGAAGGTTGTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGATATGAAGATGGAGATTTGACTCTTCGGAAAGTGTCTTCTGCGTCTAATTACATCTGGTCAGATTCTCCTCTTGAGATCTTAGGAACTGTGACTTGTATAACTTTTGATGATCCTGCTTGTTTGCTGATTAAGAATCATGATTTAACAACTGAAGAGGTTAAGGCACTTTGTGATGATTTGCGTGTCCTGGGCAAGCAAGATTTTAAGCATCTGCTGAAATGGCGATTGCACATAAGGAAGGCCTTATCTCCCAATCAAAAGGCTACGCTCACTTCTGTTAAAGATGCTGAAAATGAGGTAAAGCAGAACGAAGATGATAAATTACTAAATGAGATGGAGGAGCTGACGTATGCTATTGAACGCAAGAAGAAAAGGGAAAAGAAGCTTCTTGCAAAAAGGAGAGCTAAGGACAAAGCTAGGAAAGCGATGGGGATGCAACTAGACGTCATGGAAGAGGGTTATATTGATCACGAGTTATTCTCTCTTTCTAACATCAAGGGTAAGAATGACTTAAGAGTTGTTGATTCAACTGACTATGATGTCGACAATGGTGAGTTGGGAGAACATGAAAATGATGTAACCAATGAGGAAGATCATGGGTCTTCAGCTAGCGACATTGATTCTGATGAAGAGCGCAGAAGGTATGATGAACATATGGAGGAATTGTTGGATCAGGCTTATGAAAGCTTTGTTGCCAGAAAGGAAGGTAGTGCAAAGCAGAGGAAGCGTGCAAAAAAAGCCTACTCTGATGATGCCGAGTTACTTGAGGAGGATGAGAATGGAGGCGATGGTTTTCAATCTGATTATGACTCTGATGAAAATCTGGTAGACGAGGATAGAAATCCACTGATGGTATCTCTTGATGACGGTGGAGAGCCGACTCAAGAGGAGATCGCAAACAAATGGTTCGGTCAGGATATTTTTGCTGAAGCAGCGGAAGATGGAGATTTGAAGGAGTTGGATAGCGAAGATGATATGCAGGTTGATGGGCCAAAAGAAAAAACTGCTGTCACCAAAGTAGCCAAGTCAAATATTTCAAAGAATGCAAGAGAGAAGTCGAAAATCTCAACCAATGCAAAAGACTCTATTAAAGCAGATGATGGATTTGAGGTAGTCCCTGCCCCGGCTACAGATTCAAGCAACGATTCATCCTCTGAAGAATCCGAGGATGAAGAGCCCGACACGAAGGCTGAGATATTGGCATGTGCGAAAAAGATGGTGAGGAAAAAGCAAAGAGAGCAAATTCTTGATGATTCATATAACAAATACATGTTCGACGACACAGGCTTGCCCAAGTGGTTTTTGGACGAGGAGAAAAGACATCGTCAACCAATAAAGCCTATAACCAAAGAGGAGGTTGCAGCAATGAGAGCACAGTTCAAAGAAATCGACGCCCGCCCTGCTAAAAAGGTAGCTGAAGCTAAAGCACGAAAGAAGCGAGTTGCAATGAAGAAACTCGAAAAGGTTCGCAAGAAGGCAAACATCATCTCAGACCAGGCCGATATATCTGATCGATCAAAGAGCAAGATGATCGATCAACTTTACAAAAAAGCAGTGCCCCAGAGACCGAAAAAGGAATTTGTGGTTGCAAAGAAAGGAGTTCAAGTTCGGGTTGGGAAGGGTAAAACCTTAGTAGATCGACGAATGAAGAAGGATGCAAGGAAGCACGGAATGAGCAAGCAGGGCAAAGGTTCGAAGAAGGGAAAGAACTCAAAGGCTCCAAGAGGTAAGGGGGGATCTGCTAAGGCTTCCGGGAAGAAGGGAAGAAAGGGAAACAAATGA 2511 44.84 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGAIAIEQDITKPECKARLKKIMNEKGCAAFDLILHDGSPNVGGAWAQEAMSQNSLVIDSVKLATQLLAPKGAFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYVLGLRYTAPAKIDPRLLDVKHLFQGSVESQRKVVDVLRGTKQKRHRDGYEDGDLTLRKVSSASNYIWSDSPLEILGTVTCITFDDPACLLIKNHDLTTEEVKALCDDLRVLGKQDFKHLLKWRLHIRKALSPNQKATLTSVKDAENEVKQNEDDKLLNEMEELTYAIERKKKREKKLLAKRRAKDKARKAMGMQLDVMEEGYIDHELFSLSNIKGKNDLRVVDSTDYDVDNGELGEHENDVTNEEDHGSSASDIDSDEERRRYDEHMEELLDQAYESFVARKEGSAKQRKRAKKAYSDDAELLEEDENGGDGFQSDYDSDENLVDEDRNPLMVSLDDGGEPTQEEIANKWFGQDIFAEAAEDGDLKELDSEDDMQVDGPKEKTAVTKVAKSNISKNAREKSKISTNAKDSIKADDGFEVVPAPATDSSNDSSSEESEDEEPDTKAEILACAKKMVRKKQREQILDDSYNKYMFDDTGLPKWFLDEEKRHRQPIKPITKEEVAAMRAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANIISDQADISDRSKSKMIDQLYKKAVPQRPKKEFVVAKKGVQVRVGKGKTLVDRRMKKDARKHGMSKQGKGSKKGKNSKAPRGKGGSAKASGKKGRKGNK 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4295001 4300847 + CmoCh20G008540.1 Cmo20g00854 405171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00854 836 MobiDBLite consensus disorder prediction 496 518 - -
Cmo20g00854 836 MobiDBLite consensus disorder prediction 556 639 - -
Cmo20g00854 836 MobiDBLite consensus disorder prediction 483 537 - -
Cmo20g00854 836 MobiDBLite consensus disorder prediction 780 836 - -
Cmo20g00854 836 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 808 - -
Cmo20g00854 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 201 IPR029063 -
Cmo20g00854 836 Coils Coil 712 732 - -
Cmo20g00854 836 Gene3D Vaccinia Virus protein VP39 19 207 IPR029063 -
Cmo20g00854 836 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 808 - -
Cmo20g00854 836 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Cmo20g00854 836 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 806 IPR028589 GO:0008649|GO:0031167
Cmo20g00854 836 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Cmo20g00854 836 Pfam Spb1 C-terminal domain 607 801 IPR012920 GO:0005634|GO:0006364|GO:0008168
Cmo20g00854 836 MobiDBLite consensus disorder prediction 588 610 - -
Cmo20g00854 836 MobiDBLite consensus disorder prediction 796 816 - -
Cmo20g00854 836 MobiDBLite consensus disorder prediction 422 457 - -
Cmo20g00854 836 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00854 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1361.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00398 Cmo20g00854 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00075 Cmo-Chr14:375317 Cmo20g00854 Cmo-Chr20:4295001 3.76E-37 dispersed
Cmo04g02779 Cmo-Chr4:20046341 Cmo20g00854 Cmo-Chr20:4295001 3.05E-17 transposed
Cmo02g00398 Cmo-Chr2:2054833 Cmo20g00854 Cmo-Chr20:4295001 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00854 Cmo_Chr20 FPKM 17.765673 19.159374 32.179585 30.857792 54.554798 60.805893 49.966911 15.323451 15.525456 15.404657