Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00855 ATGGAGGAGAAGAGCAAGGTTCTGATCATAGGAGCAACAGGTTTCCTAGGGTTCCATTTGGCTCAAGCCAGCTGCAATTTTTCTCACCCTACGTTTGCTTTAATAAGAGATTCTACCTCCTCTTCACCTACTAAACTAGACAAGCTCCGAGCTCTCTCCGATGCCGGGGTTCAATTCCTCAAGGGTTCTCTGGATGACGAAGCTAGCCTGATGGAAGCTGTTAATCAAGTTGATGTGGTCATTTGTGCTGTTTCGTCTAAACAGGCGTTGGACCAGAAACTTCTGATTCAAATCATCAAACAAAATGGATCGATTAAGAGGTTTATTCCATCAGAATTTGGACTTGATCCTGATAAGGTTCAAATATCAAACATGGACTACGACTTCTATGCCCGCAAAGCTGAAATTCGTCGGCTGGTTGAAGCTGAAGGCATTCCATATACCATAATTTCTTGCAATTTTTTCATGAGTTATTTACTTCCTTCCCTTGTTCAACCAGGCATGAAAATTCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGGAATACTAAAGGTGTATTTGTGAAGGTCAGTGATGTTGCTGACTTCACAATTAGTGCGTTGGATGATCCACGCACATTGAACAAGGTAGTTTATCTAAGGCCCGAAGGAAATGTCTATTCCTTGAATGAACTGGTTGAGATTTGGGAGTGTAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTGAAGAAAATTGAAGAGACTCCTTACCCTGACAACATGGAGCTCATTTTCATATATTCTGCATTCATAAAGGGAGATCAAACGTACTTTGATATCGAGGCATCATCAAATGGTCTCGCCGGTAGTTCTCCGATCAGGTATTTATTCGCCGGAAACCTTACTTCGATGGCTCAGAATCTCAAGGTTCTAATCATTGGTGGAACTGGTTACATCGGAAAATTCATTGTACAAGCTAGCGCCAAAGCCGGTCATCCTACCTATGCATTGATCCGCAAGTCTTCGCTCGGAAGCTCTGCCAAGTCTCAAATCATCAATCATTTCAAAAGCCTTGGTGTTAAGTTCCTCTTCGGCGATCTCTTCGACAATGAGAGTTTGGTTAAGGCGATAAAGCAGGTTGATGTGGTGATATCCACCCTCGGTGGTCATATGGTTCCCCATCAGCATAAGATCCTATCTGCTATCAAACAAGCTGGCAATGTCAAGAGATTCTTTCCTACGGAATTCGGCAACGATGCCGATCACATCGACGCGGTGGAGCCAGCAAAATCGATGTACACTGCAAAGGCTGAATTTCGTAGGGTTGTTGAGGCTGAGGGAATCCCACACACATTTGTGGTATGCAATTTCTTCGATGGTTACTTCCTTAGCAACTTGTCTCAGCCAGATGCATCCGTCCCACCTAGAGACAAAGTCGTAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACCATCCGAGCCATAGATGATCCAAGAACCCTCAACAAGATCATGTACATTAGACCCCCAGCCAACATCTACTCGACCAATGATCTGGTCTCGCTGTGGGAGAGAAAAATTGGCAAGACTCTTAGAAGGGTCTATGTCCCAGAGGAGGAGGTGTTGAAGAACATCCAAGAGGCCTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCACAGGTGAGGGGATCTCAAACTAACTTCGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCGCTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTAA 1836 44.06 MEEKSKVLIIGATGFLGFHLAQASCNFSHPTFALIRDSTSSSPTKLDKLRALSDAGVQFLKGSLDDEASLMEAVNQVDVVICAVSSKQALDQKLLIQIIKQNGSIKRFIPSEFGLDPDKVQISNMDYDFYARKAEIRRLVEAEGIPYTIISCNFFMSYLLPSLVQPGMKIPPRDKVTIFGDGNTKGVFVKVSDVADFTISALDDPRTLNKVVYLRPEGNVYSLNELVEIWECKIGKKLEKNYVSEEELLKKIEETPYPDNMELIFIYSAFIKGDQTYFDIEASSNGLAGSSPIRYLFAGNLTSMAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLGSSAKSQIINHFKSLGVKFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPTEFGNDADHIDAVEPAKSMYTAKAEFRRVVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYIRPPANIYSTNDLVSLWERKIGKTLRRVYVPEEEVLKNIQEASYPLNIELALCHTAQVRGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4302016 4308964 - CmoCh20G008550.1 Cmo20g00855 405172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00855 611 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 279 IPR036291 -
Cmo20g00855 611 CDD PCBER_SDR_a 309 606 IPR045312 GO:0016491
Cmo20g00855 611 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 308 609 - -
Cmo20g00855 611 Gene3D - 152 278 - -
Cmo20g00855 611 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 3 290 - -
Cmo20g00855 611 Coils Coil 235 255 - -
Cmo20g00855 611 PANTHER PINORESINOL REDUCTASE-RELATED 3 290 - -
Cmo20g00855 611 Gene3D - 457 607 - -
Cmo20g00855 611 Gene3D - 309 597 - -
Cmo20g00855 611 Pfam NmrA-like family 310 562 IPR008030 -
Cmo20g00855 611 Pfam NmrA-like family 7 238 IPR008030 -
Cmo20g00855 611 Gene3D - 6 283 - -
Cmo20g00855 611 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 309 569 IPR036291 -
Cmo20g00855 611 PANTHER PINORESINOL REDUCTASE-RELATED 308 609 - -
Cmo20g00855 611 CDD PCBER_SDR_a 6 287 IPR045312 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00855 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 574.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00399 Cmo20g00855 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00217 Cmo-Chr19:1448765 Cmo20g00855 Cmo-Chr20:4302016 2.67E-50 dispersed
Cmo19g00551 Cmo-Chr19:6335817 Cmo20g00855 Cmo-Chr20:4302016 1.62E-68 dispersed
Cmo12g00414 Cmo-Chr12:2551353 Cmo20g00855 Cmo-Chr20:4302016 3.89E-84 wgd
Cmo19g00690 Cmo-Chr19:7301064 Cmo20g00855 Cmo-Chr20:4302016 2.45E-15 wgd
Cmo02g00399 Cmo-Chr2:2060707 Cmo20g00855 Cmo-Chr20:4302016 3.04E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00855 Cmo_Chr20 FPKM 9.525384 11.230497 4.664008 4.974142 5.987112 6.772313 6.844827 3.615458 3.563088 4.348995