Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00857 | ATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAAACGGGTCGAGTAAAATGGCGGCGAACAGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATGGCGGCCGGAGGTTGGCCGGAGCTGCGAAACAATCGGAGTGGATCGAGAAACCAGAAGAGGAAAACAGAGACATCGAAACAGAGTTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGCAAGAAGAGAGAAGATAAGTAAGAGAATGAAGTATTTGCAGAATTTAGTACCTGGGTGCAACAAAATCACTGGAAAAGCTGGAATGCTCGATGAAATTATAAACTATGTTCAATCTCTACAGCAACAAGTCGAGTTCTTATCCATGAACTTGGCTGCTCTGAATCACGAATTCGATCTCGTCAATGTCCATGACCTCTTTGTCGAGCAGATGAAGCCACGAACGAGCCCTCCCAGTCCCAATCATTATACGATATTTGAAGATTCAAAAGTTGGAAGAACAAGAACAAGAACACGAACACGAACACGATAG | 624 | 46.63 | MFAAETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLMAAGGWPELRNNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERARREKISKRMKYLQNLVPGCNKITGKAGMLDEIINYVQSLQQQVEFLSMNLAALNHEFDLVNVHDLFVEQMKPRTSPPSPNHYTIFEDSKVGRTRTRTRTRTR | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 4313087 | 4316705 | - | CmoCh20G008570.1 | Cmo20g00857 | 405174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00857 | 207 | CDD | bHLH_AtBPE_like | 84 | 170 | - | - | |
Cmo20g00857 | 207 | Pfam | Helix-loop-helix DNA-binding domain | 98 | 145 | IPR011598 | GO:0046983 | |
Cmo20g00857 | 207 | Gene3D | - | 91 | 167 | IPR036638 | GO:0046983 | |
Cmo20g00857 | 207 | MobiDBLite | consensus disorder prediction | 177 | 207 | - | - | |
Cmo20g00857 | 207 | MobiDBLite | consensus disorder prediction | 50 | 76 | - | - | |
Cmo20g00857 | 207 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 92 | 163 | IPR036638 | GO:0046983 | |
Cmo20g00857 | 207 | MobiDBLite | consensus disorder prediction | 58 | 76 | - | - | |
Cmo20g00857 | 207 | PANTHER | BHLH-TRANSCRIPTION FACTOR | 56 | 175 | - | - | |
Cmo20g00857 | 207 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 94 | 144 | IPR011598 | GO:0046983 | |
Cmo20g00857 | 207 | SMART | finulus | 100 | 150 | IPR011598 | GO:0046983 | |
Cmo20g00857 | 207 | Coils | Coil | 141 | 161 | - | - | |
Cmo20g00857 | 207 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 56 | 175 | IPR024097 | GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00400 | Cmo20g00857 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo20g00857 | Cmo-Chr20:4313087 | Cmo01g01823 | Cmo-Chr1:13357555 | 7.50E-42 | dispersed | |
Cmo19g00689 | Cmo-Chr19:7294534 | Cmo20g00857 | Cmo-Chr20:4313087 | 1.84E-50 | wgd | |
Cmo02g00400 | Cmo-Chr2:2069636 | Cmo20g00857 | Cmo-Chr20:4313087 | 6.65E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11766 | PF00010 | HLH | 1.10E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00857 | - | - | cmos:111448856 | 358.221 |