Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00857 ATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAAACGGGTCGAGTAAAATGGCGGCGAACAGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATGGCGGCCGGAGGTTGGCCGGAGCTGCGAAACAATCGGAGTGGATCGAGAAACCAGAAGAGGAAAACAGAGACATCGAAACAGAGTTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGCAAGAAGAGAGAAGATAAGTAAGAGAATGAAGTATTTGCAGAATTTAGTACCTGGGTGCAACAAAATCACTGGAAAAGCTGGAATGCTCGATGAAATTATAAACTATGTTCAATCTCTACAGCAACAAGTCGAGTTCTTATCCATGAACTTGGCTGCTCTGAATCACGAATTCGATCTCGTCAATGTCCATGACCTCTTTGTCGAGCAGATGAAGCCACGAACGAGCCCTCCCAGTCCCAATCATTATACGATATTTGAAGATTCAAAAGTTGGAAGAACAAGAACAAGAACACGAACACGAACACGATAG 624 46.63 MFAAETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLMAAGGWPELRNNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERARREKISKRMKYLQNLVPGCNKITGKAGMLDEIINYVQSLQQQVEFLSMNLAALNHEFDLVNVHDLFVEQMKPRTSPPSPNHYTIFEDSKVGRTRTRTRTRTR 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4313087 4316705 - CmoCh20G008570.1 Cmo20g00857 405174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00857 207 CDD bHLH_AtBPE_like 84 170 - -
Cmo20g00857 207 Pfam Helix-loop-helix DNA-binding domain 98 145 IPR011598 GO:0046983
Cmo20g00857 207 Gene3D - 91 167 IPR036638 GO:0046983
Cmo20g00857 207 MobiDBLite consensus disorder prediction 177 207 - -
Cmo20g00857 207 MobiDBLite consensus disorder prediction 50 76 - -
Cmo20g00857 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 163 IPR036638 GO:0046983
Cmo20g00857 207 MobiDBLite consensus disorder prediction 58 76 - -
Cmo20g00857 207 PANTHER BHLH-TRANSCRIPTION FACTOR 56 175 - -
Cmo20g00857 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Cmo20g00857 207 SMART finulus 100 150 IPR011598 GO:0046983
Cmo20g00857 207 Coils Coil 141 161 - -
Cmo20g00857 207 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 175 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00400 Cmo20g00857 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00857 Cmo-Chr20:4313087 Cmo01g01823 Cmo-Chr1:13357555 7.50E-42 dispersed
Cmo19g00689 Cmo-Chr19:7294534 Cmo20g00857 Cmo-Chr20:4313087 1.84E-50 wgd
Cmo02g00400 Cmo-Chr2:2069636 Cmo20g00857 Cmo-Chr20:4313087 6.65E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11766 PF00010 HLH 1.10E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00857 - - cmos:111448856 358.221