Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00866 | ATGTCTTCTTCATCGGATTCTCCCTCGCCTACCTTGGATTCTTCATCGTCGCCGCCGCCTCGGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTTCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGGTTCTTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCACCTACGCCGTCTGGTTCCTCTCCACCTCCGTCGAACGATTCTCCTCCACCTCCGCCGGACGCATCGCCGCCGCCTCCTGATTCCTCTTCTTCACCCCGACCGCCATCACGGAAAGACTCGAAATCTTCATCTCCTCCATCTCCTCCGCCGCCGCACGGTTCCTCTAGGCATTCTCCTCCGCCTCCTCCGAAATCGATTTCGCATCACTTTCGATCCGCAAACTCCTCATCCGGCGGCTCTAAAGCCGATGCGTTGCCGATCTTTACAGGACTGGCGGTGGCAGTAGGATTTATGCTACTCGCCGTGGTTTTGATGTTCTTCGCTTGCAGGCGAAAGAAACAGAACAAAAGTAGTGATTCCATGGGCTTCGATGAACCGTCTTCTCCGAGAAGTGGGGATCCATATTACATGAGAATGAATTACAACAGGAACAACCAAAACGAACACGTCGTGAACATAACGCCAGTCGGCGGCGGAGGACAAGGAGGAGAATGGCCGCAGCCGCCGCCTCCGCCGCCGACTCCTCCGCCGTTGGGAATAGTTAGCAGTGATATGAGTTCGAATAACTCGGGGCCACACGGGCCGGTGTTGCCGCCGCCTCACCCGTCGGTGGCGCTAGGGTTCAATAAGTGCACGTTCACATTCGACGAGCTAATGGCGGCGACGGGGGGATTCTCTCCGGCGAACCTGTTAGGGCAAGGGGGATTCGGGTACGTTCACAAAGGAGTTTTGCCTAACGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCGGGAAGTGGTCAAGGAGGTCGGGAATTCGCGGCGGAAGTGGAGATAATTAGCCGCGTTCACCACCGCCATTTGGTGTCGTTAATCGGACATTGCCTCGCCGGTGAACGGAAGTTGTTGGTTTACGAATTTGTCCCTAATAACAACCTCCAATTCCACCTTCGCGGCAAGGGGCAGTCACCGTTGGACTGGCCAACCAGGGTGAAGATAGCATTAGGCTCAGCCAAGGGCCTCGCCTATCTACACGAAGACTGTCATCCTCGCATCATCCACCGAGATATCAAGACTGCGAATATTCTCATAGACATGAGTTTCGAAGCCAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAACGACACTCATATATCGACTCGTGTTATGGGCACATTTGGATATTTAGCTCCGGAATATGCATCATCGGGAAAGCTAACAGAGAAATCAGATGTATTTTCATTCGGGGTAGTGCTTTTAGAACTGATAACGGGAAGGCGACCGATGGACACGATGGGAGAGTTCATGGAGGAAAGCTTAGTAGATTGGGCGAGGCCTCTATGCATGCAAGCAATGAAGGATGCAAACTATGAGGTGGTGAGGGCTTTGGAAGGAGACGTGTCACTGGAGGATATGAGCGACGGAGTAAAGGCGGGGCAGAGCTCGTACTTCGGCTCAAGCACGACCTCGGAGAACGACACAAGCTCCGATACCGCCGACGTGAAGAGGCTCCAAAAGAAAGCGATGGACGGCCGGGAGGAAATAAGCAGCGATTGCGGCGGCACTAGCGAGTATGGACTAAAGCCTTCGGCAACAAGCGGCGAGATCAGCTTGAAGCCCGGCCGCCAGTCATCCCCAAACGTACGGGCCACCTAA | 1941 | 55.64 | MSSSSDSPSPTLDSSSSPPPRPSDSSPPPPSDSSPPPPSGSSPPSPSGSSPPPPSDSSPPPPSDSSPPPPSDSSPPPPSGSSPPPPSGSSPPPPSGSSPPTPSGSSPPPSNDSPPPPPDASPPPPDSSSSPRPPSRKDSKSSSPPSPPPPHGSSRHSPPPPPKSISHHFRSANSSSGGSKADALPIFTGLAVAVGFMLLAVVLMFFACRRKKQNKSSDSMGFDEPSSPRSGDPYYMRMNYNRNNQNEHVVNITPVGGGGQGGEWPQPPPPPPTPPPLGIVSSDMSSNNSGPHGPVLPPPHPSVALGFNKCTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGGREFAAEVEIISRVHHRHLVSLIGHCLAGERKLLVYEFVPNNNLQFHLRGKGQSPLDWPTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNDTHISTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVVLLELITGRRPMDTMGEFMEESLVDWARPLCMQAMKDANYEVVRALEGDVSLEDMSDGVKAGQSSYFGSSTTSENDTSSDTADVKRLQKKAMDGREEISSDCGGTSEYGLKPSATSGEISLKPGRQSSPNVRAT | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 4382714 | 4387590 | - | CmoCh20G008660.1 | Cmo20g00866 | 405183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 591 | 609 | - | - | |
Cmo20g00866 | 646 | SUPERFAMILY | Protein kinase-like (PK-like) | 304 | 539 | IPR011009 | - | |
Cmo20g00866 | 646 | Pfam | Protein tyrosine and serine/threonine kinase | 329 | 529 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 575 | 646 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 621 | 646 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 138 | 165 | - | - | |
Cmo20g00866 | 646 | Gene3D | Phosphorylase Kinase; domain 1 | 301 | 399 | - | - | |
Cmo20g00866 | 646 | ProSitePatterns | Protein kinases ATP-binding region signature. | 330 | 352 | IPR017441 | GO:0005524 | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 575 | 590 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 263 | 278 | - | - | |
Cmo20g00866 | 646 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 444 | 456 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 13 | 131 | - | - | |
Cmo20g00866 | 646 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 554 | 609 | - | - | |
Cmo20g00866 | 646 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 30 | 553 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 1 | 179 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 213 | 232 | - | - | |
Cmo20g00866 | 646 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 554 | 609 | - | - | |
Cmo20g00866 | 646 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 30 | 553 | - | - | |
Cmo20g00866 | 646 | Gene3D | Transferase(Phosphotransferase) domain 1 | 400 | 576 | - | - | |
Cmo20g00866 | 646 | CDD | STKc_IRAK | 330 | 550 | - | - | |
Cmo20g00866 | 646 | MobiDBLite | consensus disorder prediction | 254 | 292 | - | - | |
Cmo20g00866 | 646 | SMART | serkin_6 | 324 | 568 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g00866 | 646 | ProSiteProfiles | Protein kinase domain profile. | 324 | 579 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00410 | Cmo20g00866 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo20g00866 | Cmo-Chr20:4382714 | Cmo04g01815 | Cmo-Chr4:9151971 | 6.23E-123 | dispersed | |
Cmo02g00410 | Cmo-Chr2:2119774 | Cmo20g00866 | Cmo-Chr20:4382714 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75166 | PF07714 | PK_Tyr_Ser-Thr | 6.90E-45 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00866 | - | - | csv:101217306 | 646.736 |