Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00866 ATGTCTTCTTCATCGGATTCTCCCTCGCCTACCTTGGATTCTTCATCGTCGCCGCCGCCTCGGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTTCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGGTTCTTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCACCTACGCCGTCTGGTTCCTCTCCACCTCCGTCGAACGATTCTCCTCCACCTCCGCCGGACGCATCGCCGCCGCCTCCTGATTCCTCTTCTTCACCCCGACCGCCATCACGGAAAGACTCGAAATCTTCATCTCCTCCATCTCCTCCGCCGCCGCACGGTTCCTCTAGGCATTCTCCTCCGCCTCCTCCGAAATCGATTTCGCATCACTTTCGATCCGCAAACTCCTCATCCGGCGGCTCTAAAGCCGATGCGTTGCCGATCTTTACAGGACTGGCGGTGGCAGTAGGATTTATGCTACTCGCCGTGGTTTTGATGTTCTTCGCTTGCAGGCGAAAGAAACAGAACAAAAGTAGTGATTCCATGGGCTTCGATGAACCGTCTTCTCCGAGAAGTGGGGATCCATATTACATGAGAATGAATTACAACAGGAACAACCAAAACGAACACGTCGTGAACATAACGCCAGTCGGCGGCGGAGGACAAGGAGGAGAATGGCCGCAGCCGCCGCCTCCGCCGCCGACTCCTCCGCCGTTGGGAATAGTTAGCAGTGATATGAGTTCGAATAACTCGGGGCCACACGGGCCGGTGTTGCCGCCGCCTCACCCGTCGGTGGCGCTAGGGTTCAATAAGTGCACGTTCACATTCGACGAGCTAATGGCGGCGACGGGGGGATTCTCTCCGGCGAACCTGTTAGGGCAAGGGGGATTCGGGTACGTTCACAAAGGAGTTTTGCCTAACGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCGGGAAGTGGTCAAGGAGGTCGGGAATTCGCGGCGGAAGTGGAGATAATTAGCCGCGTTCACCACCGCCATTTGGTGTCGTTAATCGGACATTGCCTCGCCGGTGAACGGAAGTTGTTGGTTTACGAATTTGTCCCTAATAACAACCTCCAATTCCACCTTCGCGGCAAGGGGCAGTCACCGTTGGACTGGCCAACCAGGGTGAAGATAGCATTAGGCTCAGCCAAGGGCCTCGCCTATCTACACGAAGACTGTCATCCTCGCATCATCCACCGAGATATCAAGACTGCGAATATTCTCATAGACATGAGTTTCGAAGCCAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAACGACACTCATATATCGACTCGTGTTATGGGCACATTTGGATATTTAGCTCCGGAATATGCATCATCGGGAAAGCTAACAGAGAAATCAGATGTATTTTCATTCGGGGTAGTGCTTTTAGAACTGATAACGGGAAGGCGACCGATGGACACGATGGGAGAGTTCATGGAGGAAAGCTTAGTAGATTGGGCGAGGCCTCTATGCATGCAAGCAATGAAGGATGCAAACTATGAGGTGGTGAGGGCTTTGGAAGGAGACGTGTCACTGGAGGATATGAGCGACGGAGTAAAGGCGGGGCAGAGCTCGTACTTCGGCTCAAGCACGACCTCGGAGAACGACACAAGCTCCGATACCGCCGACGTGAAGAGGCTCCAAAAGAAAGCGATGGACGGCCGGGAGGAAATAAGCAGCGATTGCGGCGGCACTAGCGAGTATGGACTAAAGCCTTCGGCAACAAGCGGCGAGATCAGCTTGAAGCCCGGCCGCCAGTCATCCCCAAACGTACGGGCCACCTAA 1941 55.64 MSSSSDSPSPTLDSSSSPPPRPSDSSPPPPSDSSPPPPSGSSPPSPSGSSPPPPSDSSPPPPSDSSPPPPSDSSPPPPSGSSPPPPSGSSPPPPSGSSPPTPSGSSPPPSNDSPPPPPDASPPPPDSSSSPRPPSRKDSKSSSPPSPPPPHGSSRHSPPPPPKSISHHFRSANSSSGGSKADALPIFTGLAVAVGFMLLAVVLMFFACRRKKQNKSSDSMGFDEPSSPRSGDPYYMRMNYNRNNQNEHVVNITPVGGGGQGGEWPQPPPPPPTPPPLGIVSSDMSSNNSGPHGPVLPPPHPSVALGFNKCTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGGREFAAEVEIISRVHHRHLVSLIGHCLAGERKLLVYEFVPNNNLQFHLRGKGQSPLDWPTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNDTHISTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVVLLELITGRRPMDTMGEFMEESLVDWARPLCMQAMKDANYEVVRALEGDVSLEDMSDGVKAGQSSYFGSSTTSENDTSSDTADVKRLQKKAMDGREEISSDCGGTSEYGLKPSATSGEISLKPGRQSSPNVRAT 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4382714 4387590 - CmoCh20G008660.1 Cmo20g00866 405183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00866 646 MobiDBLite consensus disorder prediction 591 609 - -
Cmo20g00866 646 SUPERFAMILY Protein kinase-like (PK-like) 304 539 IPR011009 -
Cmo20g00866 646 Pfam Protein tyrosine and serine/threonine kinase 329 529 IPR001245 GO:0004672|GO:0006468
Cmo20g00866 646 MobiDBLite consensus disorder prediction 575 646 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 621 646 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 138 165 - -
Cmo20g00866 646 Gene3D Phosphorylase Kinase; domain 1 301 399 - -
Cmo20g00866 646 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Cmo20g00866 646 MobiDBLite consensus disorder prediction 575 590 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 263 278 - -
Cmo20g00866 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Cmo20g00866 646 MobiDBLite consensus disorder prediction 13 131 - -
Cmo20g00866 646 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 554 609 - -
Cmo20g00866 646 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 30 553 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 1 179 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 213 232 - -
Cmo20g00866 646 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 554 609 - -
Cmo20g00866 646 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 30 553 - -
Cmo20g00866 646 Gene3D Transferase(Phosphotransferase) domain 1 400 576 - -
Cmo20g00866 646 CDD STKc_IRAK 330 550 - -
Cmo20g00866 646 MobiDBLite consensus disorder prediction 254 292 - -
Cmo20g00866 646 SMART serkin_6 324 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00866 646 ProSiteProfiles Protein kinase domain profile. 324 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00410 Cmo20g00866 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00866 Cmo-Chr20:4382714 Cmo04g01815 Cmo-Chr4:9151971 6.23E-123 dispersed
Cmo02g00410 Cmo-Chr2:2119774 Cmo20g00866 Cmo-Chr20:4382714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75166 PF07714 PK_Tyr_Ser-Thr 6.90E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00866 - - csv:101217306 646.736