Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00876 ATGGAAGAAGACAGTATAGATATGGTTCTGGCCAGAGCCACCGACCTCCGATTGAAGATCAGCAACTGCATTCACAATGCAACAACCACTGCTAGAACGGGAAATGAAGCCGCTGACGACGGCGGTTCCGGTTCCGAAACTGCGGTCGGAGATACGGAGGACGATGAAGAAGTAGAACGACTTTTGAGTGTCTGCGATGCTCTCGAGTCCTTGGAGACTCAGCTCTCCTCGTTGCAGGATTTACAACAACAACAGCGATACGAACGGGAAGCTGCCCTCAGCGAGATCGAACACAACCGCAAGATGCTACTCGACAAGCTCAAGGAGTACAAAGGGGAGCATTTGGAAGTCATAAATGAAGCTTCTGCCTTTGCTGGGGAGGCAGTAAAGAACAACCATGACTTCATGCTTCCTCCATACCCAAGCCGTCTTCCATTCCCTCTCCACCTAAACAATGGCCATTTATTACCATCCTTGTCTGCTCGCAAAGCTGCCCATAATGGGGTATCCTTAAGCTACATGAAAAACGACACGGAAAGGGAGTCAAGCGAGTCGTTGACGACCAACAAACAAGCAAGCACGAGAAACTCAAGGAGGAACGGGTTCGGTTCACTCGTAGCTGCAGCAGCCAAGGCAGTGTTCACCATTGTTGGTGTTGTGACCATAATGAGCATATCTGGTTTCGGGCCACGAATCGTAGTAAAAAGAGCTTCTACTCATTTGATGAAATCCAGTGCGATCGAACAGCCATCGACAGAAGACGAGAGACCGAGAACTCGGTGCCCGCTGGGGAAAATCCTGGTTGTGGAAGACGGGGAGGAGAGGTGTTTGGTGAAAGAGAGAATTGAAGTTCCATTTTCTTCTGCTGTGGTAAAACCAGATGTGAACTATGGATGTGGTTAA 903 49.28 MEEDSIDMVLARATDLRLKISNCIHNATTTARTGNEAADDGGSGSETAVGDTEDDEEVERLLSVCDALESLETQLSSLQDLQQQQRYEREAALSEIEHNRKMLLDKLKEYKGEHLEVINEASAFAGEAVKNNHDFMLPPYPSRLPFPLHLNNGHLLPSLSARKAAHNGVSLSYMKNDTERESSESLTTNKQASTRNSRRNGFGSLVAAAAKAVFTIVGVVTIMSISGFGPRIVVKRASTHLMKSSAIEQPSTEDERPRTRCPLGKILVVEDGEERCLVKERIEVPFSSAVVKPDVNYGCG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4423800 4427376 - CmoCh20G008760.1 Cmo20g00876 405193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00876 300 Coils Coil 68 88 - -
Cmo20g00876 300 PANTHER PLASTID DIVISION PROTEIN PDV2 1 300 IPR038939 GO:0010020
Cmo20g00876 300 Coils Coil 93 113 - -
Cmo20g00876 300 MobiDBLite consensus disorder prediction 31 55 - -
Cmo20g00876 300 PANTHER PLASTID DIVISION PROTEIN PDV2 1 300 - -
Cmo20g00876 300 MobiDBLite consensus disorder prediction 175 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00876 - - - bhj:120089136 432.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo19g00655 Cmo20g00876 CCT
Cmo11g01327 Cmo20g00876 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01327 Cmo-Chr11:9163720 Cmo20g00876 Cmo-Chr20:4423800 1.25E-67 dispersed
Cmo16g00080 Cmo-Chr16:370869 Cmo20g00876 Cmo-Chr20:4423800 2.44E-08 dispersed
Cmo19g00655 Cmo-Chr19:7045313 Cmo20g00876 Cmo-Chr20:4423800 1.78E-75 dispersed
Cmo02g00420 Cmo-Chr2:2199078 Cmo20g00876 Cmo-Chr20:4423800 1.90E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002686 2 2 1 2 1 2 4 2 2 2 0 1 3 1 2 3 2 2 4 2 2 2 1 2 2 2 1 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00876 Cmo_Chr20 FPKM 0.797907 0.913253 3.038369 4.192451 11.655454 11.631269 9.06791 1.082368 1.006228 0.872111