Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00877 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTTCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGCGCTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATCAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTTCATACAAAGCCCTGTCCGAAGTGCCATAAACCTGTGGAGAAGAACGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCTATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTATATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACAAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAATGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATACTGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCTGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.28 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGSATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERNRLSSLNTDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4428968 4434271 - CmoCh20G008770.1 Cmo20g00877 405194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00877 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cmo20g00877 589 Gene3D - 248 496 - -
Cmo20g00877 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cmo20g00877 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cmo20g00877 589 SUPERFAMILY RING/U-box 191 259 - -
Cmo20g00877 589 SMART ibrneu5 190 252 IPR002867 -
Cmo20g00877 589 SMART ibrneu5 260 325 IPR002867 -
Cmo20g00877 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cmo20g00877 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cmo20g00877 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cmo20g00877 589 SUPERFAMILY RING/U-box 114 202 - -
Cmo20g00877 589 SUPERFAMILY RING/U-box 260 325 - -
Cmo20g00877 589 Pfam Ariadne domain 329 589 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00877 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1135.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00213 Cmo-Chr8:1264553 Cmo20g00877 Cmo-Chr20:4428968 5.15E-51 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo20g00877 Cmo-Chr20:4428968 5.46E-18 dispersed
Cmo19g00236 Cmo-Chr19:1649353 Cmo20g00877 Cmo-Chr20:4428968 1.55E-10 dispersed
Cmo20g00877 Cmo-Chr20:4428968 Cmo04g00902 Cmo-Chr4:4540857 3.43E-13 dispersed
Cmo02g00422 Cmo-Chr2:2204409 Cmo20g00877 Cmo-Chr20:4428968 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00422 . 164 590 ARIADNE family AT4G34370 71.3 2.7e-182 635.6
Cmo20g00877 . 164 589 ARIADNE family AT4G34370 71.5 8.6e-181 630.6
Cmo02g00422 . 58 527 ARIADNE family AT2G16090 78.2 7.2e-224 773.9
Cmo20g00877 . 58 542 ARIADNE family AT2G16090 76.8 7.9e-223 770.4
Cmo20g00877 . 33 543 ARIADNE family AT3G27710 61.6 2.7e-184 642.5
Cmo02g00422 . 36 522 ARIADNE family AT3G27710 62.2 2.6e-182 636.0
Cmo02g00422 . 47 522 ARIADNE family AT3G27720 54.2 2.8e-143 506.1
Cmo20g00877 . 44 522 ARIADNE family AT3G27720 53.6 6.9e-142 501.5
Cmo12g01003 . 25 550 ARIADNE family AT1G05890 65.1 2.8e-222 768.8
Cmo17g00577 CST 61 631 ARIADNE family AT1G05890 60.6 3.8e-203 705.3
Cmo08g00213 CST 54 467 ARIADNE family AT1G05890 73.7 3.5e-188 655.6
Cmo12g01003 . 25 545 ARIADNE family AT1G65430 78.6 8.5e-253 870.2
Cmo17g00577 CST 16 685 ARIADNE family AT1G65430 59.3 7.0e-231 797.3
Cmo08g00213 CST 55 527 ARIADNE family AT1G65430 70.4 1.9e-207 719.5
Cmo12g01003 . 23 460 ARIADNE family AT2G31780 55.3 9.0e-149 524.2
Cmo08g00213 CST 58 392 ARIADNE family AT2G31780 56.8 6.9e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00877 Cmo_Chr20 FPKM 1.433504 2.01949 1.442209 1.868421 34.966286 32.059505 37.061733 1.663311 1.826389 1.433468