Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00877 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTTCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGCGCTCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATCAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTTCATACAAAGCCCTGTCCGAAGTGCCATAAACCTGTGGAGAAGAACGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCTATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTATATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACAAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAATGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATACTGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCTGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.28 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGSATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERNRLSSLNTDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4428968 4434271 - CmoCh20G008770.1 Cmo20g00877 405194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00877 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cmo20g00877 589 Gene3D - 248 496 - -
Cmo20g00877 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cmo20g00877 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cmo20g00877 589 SUPERFAMILY RING/U-box 191 259 - -
Cmo20g00877 589 SMART ibrneu5 190 252 IPR002867 -
Cmo20g00877 589 SMART ibrneu5 260 325 IPR002867 -
Cmo20g00877 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cmo20g00877 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cmo20g00877 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cmo20g00877 589 SUPERFAMILY RING/U-box 114 202 - -
Cmo20g00877 589 SUPERFAMILY RING/U-box 260 325 - -
Cmo20g00877 589 Pfam Ariadne domain 329 589 IPR045840 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00213 Cmo-Chr8:1264553 Cmo20g00877 Cmo-Chr20:4428968 5.15E-51 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo20g00877 Cmo-Chr20:4428968 5.46E-18 dispersed
Cmo19g00236 Cmo-Chr19:1649353 Cmo20g00877 Cmo-Chr20:4428968 1.55E-10 dispersed
Cmo20g00877 Cmo-Chr20:4428968 Cmo04g00902 Cmo-Chr4:4540857 3.43E-13 dispersed
Cmo02g00422 Cmo-Chr2:2204409 Cmo20g00877 Cmo-Chr20:4428968 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00877 K11968 - csv:101205066 1135.55