Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00883 ATGTCGACCGCCCCTTCTCCATCTCCATCTCCTTCTCCTTCTCCTTCCCCTTCCACCTCCTCCTCCGCTGCCGCCGCCGTCAATTTCCCTTCCCCCTCATCCTTACTGCCGGGAAAGCTCCCAGTCGACTTCAGTCCTCCTCTAATCGCAATGGTTGTCGTCATCGCTACCGCCTTTCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCACGTCATCCCTCCAATCCTCCTCCTAATCCGCCGCCACCGCCGCCGCTGGCGGCGGTGGCGGCGGAGACGACGGCGCGCCCGATCTTACCTCCCGTCCTCCTCCGGCGGCGACTTGGATTCGCTCCCTTACGATTCGCCTTTCTTCGAGCATACGGATGGCTTCCACGTGTTCTCCCCGTACGGCCTCGACGAATCCATCATCAAGACGATTCCACTCTCCGTCTATACTGCCAAGAGCCGCCGTGACAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTTGAAGACGACGATTACGTCCGAACGCTTCCGATTTGTTCTCACGCATTTCACGTTGATTGTATAGACGTATGGCTTAGATCACACGCGAACTGTCCTCTCTGTCGCGCGGTGGTTTTCAGGCCAGAATCTCCGTTCACGCCGGTTATGGCAGCAAGAATCCGGCCAAGCCTCGACGAAACGATCTTACAGAGCATCGTATTAGAGCCGCTAGCGGAAGGTCCTATTCCTAATCGAGATTCTTATCACGCAACAGAATCGGAAATCACGCCTTGCGTTGATGAACCAAGGAACAGTAATTCGTTAGAGGATCAAATGAACGGGCGAGATTTCTTACTGAAACGATCGTATTCATTCGGATTCGAACGAAGCTTGGCGTCAGAGAGAATGATTCTGGAACCAGCAACCGCATCGCCATGGAGGTACCGCCGTGGAAGCTTCTGGAGCAAACGGCCATCACCGTTCGGATCTCTACCGAAGGCGAGAGTGTTCTCATTCCGATACTACAGAGGAATGAAATCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCATCGAGACGAAGCAAGTCGATGACAAGTCCAATGTTTCTCCGATCGTCGGTAACCAGCGGAGGAGCAGCAACGTTCTCATCGAGCCGATTGAGATGCGGAGATCCCGAGGCATTACTATCACCGGAGAGATTCAACCGAAGATGA 1242 54.67 MSTAPSPSPSPSPSPSPSTSSSAAAAVNFPSPSSLLPGKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHVIPPILLLIRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEHTDGFHVFSPYGLDESIIKTIPLSVYTAKSRRDSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDETILQSIVLEPLAEGPIPNRDSYHATESEITPCVDEPRNSNSLEDQMNGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTSGGAATFSSSRLRCGDPEALLSPERFNRR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4456060 4457301 + CmoCh20G008830.1 Cmo20g00883 405200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00883 413 MobiDBLite consensus disorder prediction 1 25 - -
Cmo20g00883 413 CDD RING-H2_PA-TM-RING 158 201 - -
Cmo20g00883 413 Pfam Ring finger domain 158 201 IPR001841 -
Cmo20g00883 413 MobiDBLite consensus disorder prediction 1 16 - -
Cmo20g00883 413 SMART ring_2 159 200 IPR001841 -
Cmo20g00883 413 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Cmo20g00883 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 205 IPR013083 -
Cmo20g00883 413 SUPERFAMILY RING/U-box 150 207 - -
Cmo20g00883 413 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 384 - -
Cmo20g00883 413 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 384 IPR044675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00883 Cmo-Chr20:4456060 Cmo19g00246 Cmo-Chr19:1728060 3.28E-24 dispersed
Cmo20g00883 Cmo-Chr20:4456060 Cmo02g01662 Cmo-Chr2:9563701 1.48E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00883 - K19041 csv:101206300 665.225