Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00886 ATGGTTCGGATTCTGAAAAAGTTTTTCCAGGAGAAGCCTGCTTCTCCTGTTAATGATGAAGATTTCTCTGCTGAATGTTCTTTTGCGGTCGAGTATACTGGTCCTGGAATCAATTACGAAATTCCCCGTGTAGTTCCTATCAATGTCGATGATATTCCTACTGCTTCTCTTGTTGTTTCATCGTCTCAGTTCGGCGATGATTTATCGTCGCTGCCTGTGATACAACCTATCTTGAAGAAACTGAAGAGGGGCTCAAATTCCATCTCTAATTCTGTTTGTCTTGGTGCCAATAAGGAGGATAATGGGGAAGATGAATGTAATATCAATTCATGTGATGGAATTGGAAGTTCTGGTGAACTAGAGAATTTCTATGAGCAAAGGGGAAGATTAGGATCATTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCGAGCGATTCGGAATCGGAAGAATCCGGTCGGAGCTCATCTTCTGGGATTTTTGCTGTAAGAGAGGAGGAAGATGATGATGAAACTCAGCCACGGCATGGAAGAAGGCCTTCAGCTGTTACCTTTCTTGATACTCATTCAAGTCAATTTGAGGATGAGAGTATCCAAGAGATGCCTAGAGCCGAAAGGAAGGGGAAGAAAGGGTCGTGCTATTACTGCCTCAAAGGGAACCGTTTCACTGAAAAGGAAGTATGTTTAGTTTGTGGAGCCAAATATTGTGTTGAGTGTGTAATAAGAGCAATGGGATCAATGCCAGAAGGAAGGAAGTGTATCAGTTGTATTGGGTTTAGGATTGATGAATCAAGAAGAGATAACCTTGGTAAAGCCTCTAAAGTGCTCAAGAGGTTGCTTACTGACTCCGAAGTTAAGCGCACGATGTTGCGTGAGAAGTGGTGTGAAGTTAATCAGATCCCAGCAAGACTTGTTTACGTCAATGGTGACCGTTTAAGTCGCCAAGAGCTGCTTATGTTGCAAAGTTGTCGAAAGCCACCAAAGAATCTAAAACCAGGACGGTATTGGTATGACAAAGTATCAGGCTTCTGGGGAAAGGAAGGACGTGGACCGAGTCAGATAGTTAGCTTCCAGCTCGAAGTCGGAGGTCGGATGAAGAGGGACGCTAGCAATGGCGATACAAATGTGTGCATCAATAATCGAGAGATCACTAAACAAGAGCTCCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGGCCTTCTTTTTGGGTTAGTGCTGATGGATCATATCGAGAAGAGGGAATGAACAATCAGGGGAAAATATGGGACAAGACTAGAACGAAGCTTGCTTGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGCACCTTCTGGAGAGGAAATAGTGGACAAAGCTAGTTATGTTTGTCCCGAGCTGAAACCGATTCATAAACTTCTACTTGTTGGCCACAAAAATTCTGGCACGAGTACCATATTCAAGCAGGCCAAACTAATATATAAAGTTCCCTTCTCTGATGACGAGCGTCGTAATATAAAGTTCCTGATTCAAAGGAAGTTGTATTGGTATCTTGGCATACTATTGGAAGGACGGGAACGTTTTGAAGAAGAGATTTTGATGGACGAGAAAAATAAGAAACCCGTGAACGATCCGTCCTCCTCGTCAGCATCAGGGAATGAAGATCCGTTGGAGCGCAAGACCGCGTATTCCCTTGGCCTTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTCGTGGCGTCGGGTAACTTCGAAATCATATTCCCGGCTGCTACCCGTGTGTATACCCAATTAGTGGAAGAGTTATTGAAGGATGAAGCCTTTCAAGCCACATACAGTAGAAGGCACGAACTAGAAATGCTCCCAAGCGTTGCTACGTATTTCCTTGATCAGGCTGTTGTCATTTCAAGTACAGAGTATGACCCTTCTCACAAAGACATCTTGTATGCCGAGGGGATCTCCTCATGTAATAGCCTCATTAACATGGAGTTCTCGTTCCCCGAGTCACGACAGGACTCCTATCTCGATCCTCCTTACGAGCACGATTCGTCGTTAAGGTACCAGCTTATTCGAGTTCATCATAGTACCCTGGGAGGGAACTGCAAATGGTTGGAGATGTTTGAAGACATGAACATAATCTTATTTTGTGTTGCTTTGACCGATTACGACGAATTCGACGAAGACGATAACGGCGTTCTAGTAAACCGGATGATGGCAAGCAAGCAACTCTTCGAAAGCATCGTGACGCATCGAGCCTCGAGAGGGAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTCTTTGAAGAAAAGATCATTCAAGTTCCTCTTGACCAATGCGAGTGGTTCCACGACTTCAATTCGATGATGGCTACAAATTCGGGTGGAGGAAGTAGCAGCGACACGAACCCGGCATTTGCTCAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGATTGTTCAGTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAGACTACAGGAATGAAGGCTGAAAATGTGAATGCAGCTCTTAGATTTGCAAGGGAGATAATCAAATGGCAAGTAGACAAGCCTAACCTCAGCGTTACTGAAATTTCAAGTACCAGCGTTGATGCAAGCAGCAGCTTCACATAG 2640 43.75 MVRILKKFFQEKPASPVNDEDFSAECSFAVEYTGPGINYEIPRVVPINVDDIPTASLVVSSSQFGDDLSSLPVIQPILKKLKRGSNSISNSVCLGANKEDNGEDECNINSCDGIGSSGELENFYEQRGRLGSLEIKNEEDFQGYTNSSDSESEESGRSSSSGIFAVREEEDDDETQPRHGRRPSAVTFLDTHSSQFEDESIQEMPRAERKGKKGSCYYCLKGNRFTEKEVCLVCGAKYCVECVIRAMGSMPEGRKCISCIGFRIDESRRDNLGKASKVLKRLLTDSEVKRTMLREKWCEVNQIPARLVYVNGDRLSRQELLMLQSCRKPPKNLKPGRYWYDKVSGFWGKEGRGPSQIVSFQLEVGGRMKRDASNGDTNVCINNREITKQELRILKMAGVPCEGRPSFWVSADGSYREEGMNNQGKIWDKTRTKLACALFSLPIPSNSAPSGEEIVDKASYVCPELKPIHKLLLVGHKNSGTSTIFKQAKLIYKVPFSDDERRNIKFLIQRKLYWYLGILLEGRERFEEEILMDEKNKKPVNDPSSSSASGNEDPLERKTAYSLGLKLKGFADWLLQVVASGNFEIIFPAATRVYTQLVEELLKDEAFQATYSRRHELEMLPSVATYFLDQAVVISSTEYDPSHKDILYAEGISSCNSLINMEFSFPESRQDSYLDPPYEHDSSLRYQLIRVHHSTLGGNCKWLEMFEDMNIILFCVALTDYDEFDEDDNGVLVNRMMASKQLFESIVTHRASRGKNFLLILNKFDLFEEKIIQVPLDQCEWFHDFNSMMATNSGGGSSSDTNPAFAQRAFQYIAVKFKRLFSSLTDKKLFVSQTTGMKAENVNAALRFAREIIKWQVDKPNLSVTEISSTSVDASSSFT 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4475151 4480186 + CmoCh20G008860.1 Cmo20g00886 405203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00886 879 SMART galpha_1 449 867 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 855 IPR027417 -
Cmo20g00886 879 SUPERFAMILY Transducin (alpha subunit), insertion domain 496 649 IPR011025 GO:0007165
Cmo20g00886 879 ProSiteProfiles G-alpha domain profile. 467 868 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 MobiDBLite consensus disorder prediction 139 162 - -
Cmo20g00886 879 MobiDBLite consensus disorder prediction 135 206 - -
Cmo20g00886 879 Gene3D - 497 650 IPR011025 GO:0007165
Cmo20g00886 879 PRINTS Alpha G protein (transducin) signature 470 485 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 PRINTS Alpha G protein (transducin) signature 709 737 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 PRINTS Alpha G protein (transducin) signature 757 766 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 876 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 Pfam G-protein alpha subunit 468 853 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo20g00886 879 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 876 - -
Cmo20g00886 879 Gene3D - 659 860 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00886 - - - csv:101202880 1376.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00428 Cmo20g00886 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01016 Cmo-Chr3:7616052 Cmo20g00886 Cmo-Chr20:4475151 1.53E-07 dispersed
Cmo07g00750 Cmo-Chr7:3397918 Cmo20g00886 Cmo-Chr20:4475151 5.46E-07 dispersed
Cmo16g01243 Cmo-Chr16:8889767 Cmo20g00886 Cmo-Chr20:4475151 0 dispersed
Cmo20g00886 Cmo-Chr20:4475151 Cmo16g00607 Cmo-Chr16:2949630 1.81E-09 dispersed
Cmo02g00428 Cmo-Chr2:2238080 Cmo20g00886 Cmo-Chr20:4475151 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00886 Cmo_Chr20 FPKM 46.199574 48.005688 125.031822 121.951958 112.102623 116.402786 109.507019 131.733734 150.917938 134.164642