Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00891 ATGACTGATTTTTCAGCTTTTCGAACGGGCGGATTCAAGAGGAAAATGCCGCGCCCTTATTTTCACAAGCTTGTGCTCTCCTCCACTATTCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTGTTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAACCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACCTGATTCTAGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCGGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCGGCACTATGAATCCTCCTCCGCTGCGAAGTGTTACCCAGATTAAGCTGATCAGAAACTAA 1236 43.04 MTDFSAFRTGGFKRKMPRPYFHKLVLSSTIQARKLRIPETFVRMIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGGKKRKPDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSVTQIKLIRN 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4516883 4521349 - CmoCh20G008910.1 Cmo20g00891 405208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00891 411 ProSiteProfiles B3 DNA-binding domain profile. 285 380 IPR003340 GO:0003677
Cmo20g00891 411 SMART B3_2 285 380 IPR003340 GO:0003677
Cmo20g00891 411 SMART B3_2 21 113 IPR003340 GO:0003677
Cmo20g00891 411 PANTHER B3 DOMAIN-CONTAINING 230 392 - -
Cmo20g00891 411 PANTHER B3 DOMAIN-CONTAINING 16 168 - -
Cmo20g00891 411 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Cmo20g00891 411 Gene3D - 262 382 IPR015300 -
Cmo20g00891 411 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cmo20g00891 411 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cmo20g00891 411 Pfam B3 DNA binding domain 288 378 IPR003340 GO:0003677
Cmo20g00891 411 Pfam B3 DNA binding domain 22 110 IPR003340 GO:0003677
Cmo20g00891 411 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cmo20g00891 411 Gene3D - 13 114 IPR015300 -
Cmo20g00891 411 MobiDBLite consensus disorder prediction 216 242 - -
Cmo20g00891 411 CDD B3_DNA 283 378 IPR003340 GO:0003677
Cmo20g00891 411 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 230 392 - -
Cmo20g00891 411 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 168 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00432 Cmo20g00891 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00431 Cmo-Chr2:2250298 Cmo20g00891 Cmo-Chr20:4516883 8.42E-57 dispersed
Cmo02g00432 Cmo-Chr2:2256945 Cmo20g00891 Cmo-Chr20:4516883 0 dispersed
Cmo02g00576 Cmo-Chr2:3370604 Cmo20g00891 Cmo-Chr20:4516883 1.83E-44 dispersed
Cmo20g00891 Cmo-Chr20:4516883 Cmo20g01171 Cmo-Chr20:11514073 2.05E-11 dispersed
Cmo20g00890 Cmo-Chr20:4510512 Cmo20g00891 Cmo-Chr20:4516883 2.01E-68 tandem
Cmo12g00450 Cmo-Chr12:2758114 Cmo20g00891 Cmo-Chr20:4516883 7.05E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11769 PF02362 B3 6.00E-18 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00891 - - csv:101213446 776.163