Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00892 ATGCTTTTTTTTCCCTCGTTGTACATGGTGAAGATGATGAGTGAAGGCAGAATGGGTGCGATGGGGACGGTGACAGTGGTTTTGGTTGTGACGGTGCTGGTTTTGGTTGCGGAAGGAATCGATACGAACGACGTATACAGTCCATGTTTGGATGCGAAGATTCAGAAATCAGATGGATTCACTTTTGGCATAGCGTTTTCGTCGAAGGAAGCTTTCTTTCAGGATCAGATTCAATTTTCGCCTTGTGATAGTCGTCTCGCTTTGATATACAAAAACACTCAACTTGCCCTTTTCAGGCCTAAAGTCGACCAGCTCTCTTTACTCACCATTAATAGTACGACTTTCAATCCGGCTATGAATGGTGGGTATATGGTAGCATTTGCTGGGCTGAAGTATGCAGCAAGATCTCTCCCAGTAATGATTACCGATAACTCTCACACCATAACTAGTTTCACTTTGGTTTTTGAATTTCAAAGGGGCACTCTTCAAAACCTGTTCTGGAAGAAATATGGATGCGAGAAATGCACTGGGGATTTTTCAGTGTGTCTGGACAACCAAGACTGTGCAGTTTCGAGCTCCAAATGCAAGTACCATGGCGGTTCTGTTGACTGCAATATAAGCATACAACTAGCATTTTCAGGGACAGACAGGAACCTGGAAGTCCTCAACTCCTGGTTTGAAGTTGACAATCTCATGCGCTTCTCCCTCTTCAAACTTTTCGCTGATGTTCGTGATACCGTCACCAATCCATTCGGGTAA 759 44.14 MLFFPSLYMVKMMSEGRMGAMGTVTVVLVVTVLVLVAEGIDTNDVYSPCLDAKIQKSDGFTFGIAFSSKEAFFQDQIQFSPCDSRLALIYKNTQLALFRPKVDQLSLLTINSTTFNPAMNGGYMVAFAGLKYAARSLPVMITDNSHTITSFTLVFEFQRGTLQNLFWKKYGCEKCTGDFSVCLDNQDCAVSSSKCKYHGGSVDCNISIQLAFSGTDRNLEVLNSWFEVDNLMRFSLFKLFADVRDTVTNPFG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4524047 4526379 + CmoCh20G008920.1 Cmo20g00892 405209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00892 252 PANTHER - 21 251 - -
Cmo20g00892 252 PANTHER DPH3 HOMOLOG-RELATED 21 251 IPR044248 GO:0017183|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00892 - - - csv:101222204 394.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00433 Cmo20g00892 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00536 Cmo-Chr6:2589922 Cmo20g00892 Cmo-Chr20:4524047 5.54E-88 dispersed
Cmo14g00368 Cmo-Chr14:1706014 Cmo20g00892 Cmo-Chr20:4524047 2.09E-84 dispersed
Cmo20g00159 Cmo-Chr20:795653 Cmo20g00892 Cmo-Chr20:4524047 1.05E-87 dispersed
Cmo20g00892 Cmo-Chr20:4524047 Cmo20g00945 Cmo-Chr20:4959717 1.24E-29 dispersed
Cmo02g00433 Cmo-Chr2:2262900 Cmo20g00892 Cmo-Chr20:4524047 7.60E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g502 . . Bda06g01029 . Bpe07g00399 . . Bma12g00480 . . Cma02g00431 Cma20g00885 Car02g00286 Car20g00762 . . . . . . . . . . . . . . . . . . . . Cone10ag1129 Lsi10g00321 . Chy11g00425 . . . . . . . . . . Cmo02g00433 Cmo20g00892 . . . . . Cpe05g01231 . . . . . . . Cla09g01729 Cam09g1823 Cec09g1883 Cco09g1976 . . Cre01g0685 . Csa02g01210 . Cme11g00494
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009804 2 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00892 Cmo_Chr20 FPKM 189.139099 195.95636 151.30217 148.854996 75.645966 80.648376 73.783417 210.792084 209.423508 200.303299