Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00899 ATGGCCCAGCCGTCCAACGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTACCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTACCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGTAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCCTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAATTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGCTATAAGGCCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAATCGAACAACACGACTATATTTGTTGGTGGCCTTGATTCTGATGTTAGTGACGAAGATCTCAGGCAACCTTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATCCCAATCGGAAAGGGATGTGGATTTGTGCAATTTGCCAACAGGTACTCTGGCCTCATTGGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGTACAGTTATCGGCAAGCAAACTGTTCGTCTTTCTTGGGGTCGCAGTACAGGGAACAAGCAGATTACTACTTGTTGTTGCATTGCTGCATCATACTGTTGCAATAATCGTAAATCTGTTCTTAGCTACTATGAACACATTTTTGTAGGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGAGGGCAAGGCTATGGTGGCTATGGTGGTTACTATATACCACAGCATCAGGACGCAAACATGCATGCCGCAGCTGCCGCAGTCAATGGGACATCTTGAGAAGGCCATTGCCATGGCCATTGCCATTGCCATTGCCATTGCCACCGTCAAACTAAAATCTGAGCATTCAAAACACAAATCTATTAGCTATCAATATATACATTGA 1509 45.53 MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQPPPLQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQAIRPLVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRYSGLIGKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQITTCCCIAASYCCNNRKSVLSYYEHIFVGGEVILITNGMGDVMEGKAMVAMVVTIYHSIRTQTCMPQLPQSMGHLEKAIAMAIAIAIAIATVKLKSEHSKHKSISYQYIH 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4559291 4567379 - CmoCh20G008990.1 Cmo20g00899 405216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00899 502 SUPERFAMILY RNA-binding domain, RBD 172 284 IPR035979 GO:0003676
Cmo20g00899 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Cmo20g00899 502 CDD RRM2_SECp43_like 187 266 - -
Cmo20g00899 502 CDD RRM1_SECp43_like 96 176 - -
Cmo20g00899 502 MobiDBLite consensus disorder prediction 64 93 - -
Cmo20g00899 502 SUPERFAMILY RNA-binding domain, RBD 63 177 IPR035979 GO:0003676
Cmo20g00899 502 CDD RRM3_NGR1_NAM8_like 308 385 - -
Cmo20g00899 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Cmo20g00899 502 Gene3D - 291 395 IPR012677 -
Cmo20g00899 502 SMART rrm1_1 189 263 IPR000504 GO:0003723
Cmo20g00899 502 SMART rrm1_1 96 169 IPR000504 GO:0003723
Cmo20g00899 502 SMART rrm1_1 310 383 IPR000504 GO:0003723
Cmo20g00899 502 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 396 - -
Cmo20g00899 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723
Cmo20g00899 502 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 396 - -
Cmo20g00899 502 MobiDBLite consensus disorder prediction 1 22 - -
Cmo20g00899 502 MobiDBLite consensus disorder prediction 64 87 - -
Cmo20g00899 502 SUPERFAMILY RNA-binding domain, RBD 303 392 IPR035979 GO:0003676
Cmo20g00899 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 380 IPR000504 GO:0003723
Cmo20g00899 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Cmo20g00899 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 260 IPR000504 GO:0003723
Cmo20g00899 502 Gene3D - 94 174 IPR012677 -
Cmo20g00899 502 Gene3D - 176 281 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00899 - - - cmax:111499959 602.823
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00452 Cmo20g00899 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01919 Cmo-Chr1:13740073 Cmo20g00899 Cmo-Chr20:4559291 6.72E-151 dispersed
Cmo09g00205 Cmo-Chr9:942757 Cmo20g00899 Cmo-Chr20:4559291 1.32E-132 dispersed
Cmo18g00277 Cmo-Chr18:1827056 Cmo20g00899 Cmo-Chr20:4559291 1.97E-118 dispersed
Cmo18g00278 Cmo-Chr18:1831121 Cmo20g00899 Cmo-Chr20:4559291 1.62E-123 dispersed
Cmo02g00452 Cmo-Chr2:2362482 Cmo20g00899 Cmo-Chr20:4559291 0 transposed
Cmo12g00459 Cmo-Chr12:2817085 Cmo20g00899 Cmo-Chr20:4559291 1.13E-149 wgd
Cmo02g00450 Cmo-Chr2:2351397 Cmo20g00899 Cmo-Chr20:4559291 9.86E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00899 Cmo_Chr20 FPKM 40.71978 48.499359 20.007879 22.168636 44.561863 47.885452 44.007992 31.109932 32.74818 28.84741