Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00900 ATGGCTTCTTCAACAAACGACGTCGCCGACGAGTTCTTTCCCTTCTTAAGAATCTACAAAGACGGCCGCATCCAACGGCTCCAAGTCACCTCCGACATAGTCTCCGCCTGCGCCGACGACCCCAACTCCGCTTTCCGAGCAAAGGATGTCACGATCTCCGTGGATTCCGCCCTTTCGGTGCGTATTTTCATCCCTTCCGCCGTAGATCTGAATCAGAAGCTGCCCCTTCTGTTGTACGTCCACGGTGGAGCCTTCTGCTTCGAATCGGCTTTTAATTTGCAGTACCATAGGCACGTGGGTTCTCTCGCTGCTAAGGCCAACGCCGTCGCTGTTTCCGTCGAGTACCGCCTCGCGCCGGAGAATCCAATCCCCGCCTGCTATGACGATTGTTGGGATGCGTTACGGTGGATCGCGGCCCATGTGAACAGGGATGGTCCAGAGCCGTGGCTGAACCAGCACGCAGATTTGGACCGGATCTGTTTAGCTGGCGACAGTGCGGGCGCCAACATCTGCCATCACTTGGCTGTTCGTGCAGGAACATCAGCAGAGCAGCTGGGCAGAGTAAAGGTGGTGGCATTGGCTTTGATTCACCCGTTCTTTGGCGACGGGGCGGGGGACCGGCTGTGGAAGTATCTGTGTTCGGACACCACTTGGCTGAGGCCCACCGCACAGGATCTCGCCACGTTGCCTTGTCGGAGAGTGAAGATCTTTCTGGCAGAGAAAGATTCTCTGAAGTTCGGAGGGCGGAATTACGATGAGGATTTGAAGAGCAGCGGGTGGAAGGGGGCCGTGGAGACGGTGGAGCACGGCGGAGAGGATCATGTGTTTCATTTGAAGATGCCGGAGTGTGAAAAGGCCGTTGATTTGATGGAAAAATTATCCTGTTTCATAAACTTAGATTAG 903 55.26 MASSTNDVADEFFPFLRIYKDGRIQRLQVTSDIVSACADDPNSAFRAKDVTISVDSALSVRIFIPSAVDLNQKLPLLLYVHGGAFCFESAFNLQYHRHVGSLAAKANAVAVSVEYRLAPENPIPACYDDCWDALRWIAAHVNRDGPEPWLNQHADLDRICLAGDSAGANICHHLAVRAGTSAEQLGRVKVVALALIHPFFGDGAGDRLWKYLCSDTTWLRPTAQDLATLPCRRVKIFLAEKDSLKFGGRNYDEDLKSSGWKGAVETVEHGGEDHVFHLKMPECEKAVDLMEKLSCFINLD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4570846 4572831 + CmoCh20G009000.1 Cmo20g00900 405217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00900 300 PANTHER CARBOXYLESTERASE 12-RELATED 5 298 - -
Cmo20g00900 300 PANTHER ARYLACETAMIDE DEACETYLASE 5 298 - -
Cmo20g00900 300 Pfam alpha/beta hydrolase fold 77 199 IPR013094 GO:0016787
Cmo20g00900 300 Gene3D alpha/beta hydrolase 15 299 IPR029058 -
Cmo20g00900 300 SUPERFAMILY alpha/beta-Hydrolases 15 298 IPR029058 -
Cmo20g00900 300 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 159 171 IPR033140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00900 - - - csv:101215847 491.115
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00453 Cmo20g00900 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00900 Cmo-Chr20:4570846 Cmo20g00903 Cmo-Chr20:4584176 8.42E-85 dispersed
Cmo20g00900 Cmo-Chr20:4570846 Cmo20g00901 Cmo-Chr20:4574894 2.65E-88 tandem
Cmo02g00453 Cmo-Chr2:2368848 Cmo20g00900 Cmo-Chr20:4570846 1.89E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g443 . Blo15g00733 . Bda08g00848 . . . . . . Cma02g00444 Cma20g00893 Car02g00301 Car20g00770 . . . . . . . . . . . . . . . . . . . . . Lsi10g00302 . Chy11g00444 . . . . . . . . . . Cmo02g00453 Cmo20g00900 . . . . . . Bhi10g02087 . . . Hepe08g1071 . . Cla09g01703 Cam09g1798 Cec09g1861 Cco09g1952 . . Cre01g0708 . Csa02g01192 . Cme11g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00900 Cmo_Chr20 FPKM 14.645715 17.102285 9.087674 8.073505 5.071214 4.742224 3.622375 13.461332 14.31486 12.18081