Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00901 ATGGATTCCACCGAAATTGCCCACAACTTTTCCCCTTTGTTTATCGTTTACAAAGACGGTACCGTCCACAGGTTAGTCGGCAACGATGCAATACCCCCTTCTCCGGATCCCGTTACCGGCGTCGATTCCAAAGACGTCGTCATCTCCCCGGAAACCGCTGTCTCTGTTCGGATTTACAGGCCCAAACCCGCCACCGCACAACCCCAGAAGCTTCCTGTTCTCGTTTACGTCCACGGCGGTGGCTTCTGCATCGAATCGGCATTCTCCCCTTTCTACGACCGCCACGTCAAGTCCTTAGCTGCTGAAGCCAACGTTGTCGCCGTCTCCGTCGACTACCGCCTTGCTCCGGAGCACCCTCTTCCGATTGCTTATGAAGATTCATGGGCCGCTCTGAAATGGGTTGCTGCCCATTCCGACGGAAACGGGCCGGAGGAGTGGCTGAATGGAATCGTGGATTTGGATCGGGTTTATTTTGCTGGAGATAGCGCCGGAGCTAATATTGTTCATCACTTGGCGGTTCGGGTCGGGTCGGAGGGGATAGCCGGGTTGAATCTGAAGGGATTGATTTTGGTTCATCCTTATTTCTGGGGAGGGAAATTGGTCGGAGATGAAGAGAAGCTGAGACCAGAGGAAAGACACTTTATGGAGAAATTGTGGTATGTGACTTGCCCTACAATTAGCGGGTTAGATGACCCGATTGTGAACCCGGAATATGACCCGAAATTGGGACAGCTGGCGGCGGAGAGAGTGGTGGTTTATGTGGCGGAGAAGGATGCTCTGAAGAACAGAGGATGGTTTTACAGTGAGTGTTTGAAGAAATCGGGATGGGGTGGCACCGTCGAGGTCGTGGAGACAAAAGGCGAAGGCCACGTGTTTCATTTGTTCAACCCCACGACCGACGTGGCGCTGGATTTCGTCAGAAACCTTGCTGCCTTCATCAATGGCAATGGCGGCCGCCGTGAGTGA 966 53.42 MDSTEIAHNFSPLFIVYKDGTVHRLVGNDAIPPSPDPVTGVDSKDVVISPETAVSVRIYRPKPATAQPQKLPVLVYVHGGGFCIESAFSPFYDRHVKSLAAEANVVAVSVDYRLAPEHPLPIAYEDSWAALKWVAAHSDGNGPEEWLNGIVDLDRVYFAGDSAGANIVHHLAVRVGSEGIAGLNLKGLILVHPYFWGGKLVGDEEKLRPEERHFMEKLWYVTCPTISGLDDPIVNPEYDPKLGQLAAERVVVYVAEKDALKNRGWFYSECLKKSGWGGTVEVVETKGEGHVFHLFNPTTDVALDFVRNLAAFINGNGGRRE 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4574894 4575859 + CmoCh20G009010.1 Cmo20g00901 405218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00901 321 Gene3D alpha/beta hydrolase 9 316 IPR029058 -
Cmo20g00901 321 PANTHER ARYLACETAMIDE DEACETYLASE 3 314 - -
Cmo20g00901 321 SUPERFAMILY alpha/beta-Hydrolases 11 315 IPR029058 -
Cmo20g00901 321 PANTHER CARBOXYLESTERASE 2-RELATED 3 314 - -
Cmo20g00901 321 Pfam alpha/beta hydrolase fold 74 293 IPR013094 GO:0016787
Cmo20g00901 321 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 156 168 IPR033140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00901 - - - cmax:111484271 642.499
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00454 Cmo20g00901 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01914 Cmo-Chr1:13724284 Cmo20g00901 Cmo-Chr20:4574894 8.62E-98 dispersed
Cmo02g00453 Cmo-Chr2:2368848 Cmo20g00901 Cmo-Chr20:4574894 1.19E-95 dispersed
Cmo05g00198 Cmo-Chr5:869501 Cmo20g00901 Cmo-Chr20:4574894 4.89E-96 dispersed
Cmo20g00901 Cmo-Chr20:4574894 Cmo20g00903 Cmo-Chr20:4584176 3.57E-153 dispersed
Cmo20g00900 Cmo-Chr20:4570846 Cmo20g00901 Cmo-Chr20:4574894 2.65E-88 tandem
Cmo20g00901 Cmo-Chr20:4574894 Cmo20g00902 Cmo-Chr20:4580724 5.08E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g440 . . . Bda08g00850 . . . . . . Cma02g00445 Cma20g00895 . . . . . . . . . . . . . . . . . . . . . Cone3ag1108 . Lsi10g00295 . Chy11g00445 . . . . . . . . . . Cmo02g00454 Cmo20g00901 . . . . . . Bhi10g02089 Tan05g1411 . . Hepe08g1073 . . Cla09g01700 Cam09g1796 Cec09g1859 Cco09g1949 . . Cre01g0711 . . . Cme11g00519
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00901 Cmo_Chr20 FPKM 32.858482 40.300877 29.850124 30.741993 60.411808 56.248989 59.852802 27.152817 26.196447 21.889383