Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00929 ATGGATAGATCACCTAGCTCACTTCATCCCTTTTGTCGCCCCTCAAATTCTCCTCTCTGGACCATGACCGTCAAGGTTGAACTCCAGAAGATTGGAATTCTTGGGCTTCAGCTAATATGGCATTTCCTGCATTTGATTCTTAGCTCATTTTACTTTGTGGTTGGTATTGCCACAACACTTGAAAGTTATTTGATATCATGTGGACTCCTACGCAAGTACAATCATCTTAGTATAGAGATGGTTAAATATCTTGCCATTGTGGTGGATAGTGATGAAGCTTATAATACTTTAAAAATTATTGAACTTCTGCAATGGTTAGCATCGTTGGGCATTAGAAGCATTTGCTTGTATGATGTTGAAGGGGTGCTTAAGCAATCCAAGGAAATCATTTTGAAGAAAGTAAACAATGCGTCGGTGTTCCAGGACATTACTCTGGAGTTCATATCAATCTCTGATGGAAAGGAAGCCGTTGCCAAAGCAGCTAATTTTCTTCTTGAAAATAAGTTCAGAAAAACGAACATGAGCGAAGATCACAGGCGGCGCTTTTCTGAATCTCAGATGACTGAGGCTTTAAAAGCAGTTGGTTGTGGAGGACCTGATCCCGACCTTATGTTAGTATATGGACCTATACGATGTCACTTAGGGTTTCCTGCATGGAGAATTCCCTACACAGAGATTCTACACATGGGACCATTGAAATCCATGAAGTATGGTTCCCTGGTGAAAGCCATTTACAAATTTACCATGGTGCGGCAAAACTATGGTAAATGA 771 40.6 MDRSPSSLHPFCRPSNSPLWTMTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMVKYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQDITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4811069 4816761 - CmoCh20G009290.1 Cmo20g00929 405246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00929 256 Gene3D - 90 256 IPR036424 GO:0016765
Cmo20g00929 256 PANTHER UNCHARACTERIZED 28 256 IPR038887 GO:0019408|GO:1904423
Cmo20g00929 256 SUPERFAMILY Undecaprenyl diphosphate synthase 82 248 IPR036424 GO:0016765
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00929 K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87] - csv:101219590 387.497
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g393 . . . . . . . . . . . Cma20g00922 . Car20g00807 . . . . . . . . . . . . . . . . . . . Cone6ag1272 . . . Chy11g00460 . . . . . . . . . . . Cmo20g00929 . . . . . Cpe01g00435 Bhi10g02092 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006125 0 2 0 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 7 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00929 Cmo_Chr20 FPKM 14.047896 14.128799 29.795664 32.352161 32.59462 29.409405 32.814411 38.892677 36.924751 35.843838