Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00938 ATGGAGATTTGGTTCATCATCCTCGTCTCCCTCTGCATCAGCTATGTTCTAAGCTCCATTTTAAGCCATTTCCGAAGCTCCACCAAGCTCCCACCAGGCCCTCCTTCAATCCCCATCATCTCCACTTTCCTATGGCTCCGCACATCGCCTCTCCAATTGGAGTCTTACCTCCGCACCGCCGTCGCCAAATACGGCCCCATCGTCACCCTCCGCATTGGCTCTCGCATCTCCATCTTCATAGCTGACCGCACCATTGCCCACAACGCCCTCCTCCAACATGGCGCTCTCTTCGCCGACCGCCCACCACCTCCTCCTTTGACCAAAATCCTCTTCAGCAACCAGCACAGCATCCACTCCGCCCCTTACGGTCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTGTCAGGTCCTACGCTCCTGCTCGCAAGTGGGTTTTGGATATTCTTCTTAAACGCCTTCTCTCCCACTCTGAATCGGGAACTCCCGTCTGTGTTGCTGATCATTTTCAGTACGCCATGTTCTGTTTGCTGGTGCTAATGTGCTTTGGGGATAAACTCGACGAACCCAAAATCAAAGAAGTCGAGAATGTGCAGCGTACGATGCTGCTAAATCTTAGTCGATTTGGTCTCCTTAACTTATCGCCTAAATTGACAAAGATTTTCCTTCCAAAACGCTGGGAGGAGTTTCTCCAACTAAGAAAGAACCAAGAGAGGGTCATAATCCCTCTAATCGAAGCAAGAAGGAAGGCCAACCAAAACAGAGGAAACAGAGAAAACAGAGAAGGTAAAGAAGAAGAAGAAGAAGATGAAGATTTCGTGTTGTCGTATGTGGATACACTCCTCGAATTACGCCACCCCGAAGAGGAAAATAGGAAGATAACAGACGGCGAAATGGTCAGTCTATGCTCGGAATTCCTCGCCGGCGGCATCGATACCACTGCCACGACCATGCCGTGGATAATGGCGAATTTGGTGAAATACCCAGAAATCCAACACAAGCTTTTTGCAGAGATGAAAGGAGTAATGGGGGATAGAACATCAGAGGAGGTGAAGGAGGAGGATTTGGGGAAACTTCCATATCTGAAAGCAGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCTTTTCCTAGAAGCACGAGGGGTGAAAGAGGATATAGAATTCGAAAACTACCTGATACCCAAGACCGCGACTGTAAATTTCATGGCGACGGAGATGGGTCGGGGTGCAGATGTATGGGAAGATCCGATGGCGTTTAAGCCGGAGAGGTTCATGGGAGGAGGAGCGGCGGCGTTTGATGTAACGGGGAGCAGAGAGATAAAGATGATGCCGTTCGGAGCAGGGAGGAGGATGTGTCCGGGATATGGTTTGGGGATTCTTCATTTGGAATATTACTTAGCGAATATGATATGGAGGTTTGAATGGAAGGCTGTGGATGGTGACGACGTTGATCTGTCGGAGAAGGTAGAGTTCACCGTTGTGATGAAAAACCCTCTGAAAGCCATCATAAGTCCCAGGTTTTGA 1551 49.71 MEIWFIILVSLCISYVLSSILSHFRSSTKLPPGPPSIPIISTFLWLRTSPLQLESYLRTAVAKYGPIVTLRIGSRISIFIADRTIAHNALLQHGALFADRPPPPPLTKILFSNQHSIHSAPYGPLWRLLRRNLTSQILHPSRVRSYAPARKWVLDILLKRLLSHSESGTPVCVADHFQYAMFCLLVLMCFGDKLDEPKIKEVENVQRTMLLNLSRFGLLNLSPKLTKIFLPKRWEEFLQLRKNQERVIIPLIEARRKANQNRGNRENREGKEEEEEDEDFVLSYVDTLLELRHPEEENRKITDGEMVSLCSEFLAGGIDTTATTMPWIMANLVKYPEIQHKLFAEMKGVMGDRTSEEVKEEDLGKLPYLKAVVLEGLRRHPPGLFLEARGVKEDIEFENYLIPKTATVNFMATEMGRGADVWEDPMAFKPERFMGGGAAAFDVTGSREIKMMPFGAGRRMCPGYGLGILHLEYYLANMIWRFEWKAVDGDDVDLSEKVEFTVVMKNPLKAIISPRF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4885103 4886653 - CmoCh20G009380.1 Cmo20g00938 405255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00938 516 PANTHER CYTOCHROME P450 4 514 - -
Cmo20g00938 516 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Cmo20g00938 516 Gene3D Cytochrome P450 24 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 514 - -
Cmo20g00938 516 SUPERFAMILY Cytochrome P450 31 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00938 516 Pfam Cytochrome P450 31 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00935 Cmo-Chr20:4859491 Cmo20g00938 Cmo-Chr20:4885103 0 dispersed
Cmo20g00936 Cmo-Chr20:4868601 Cmo20g00938 Cmo-Chr20:4885103 0 dispersed
Cmo20g00937 Cmo-Chr20:4879104 Cmo20g00938 Cmo-Chr20:4885103 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00938 K24184 - csv:105434706 800.816