Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00978 ATGGCGGTGGAGCTCCTCTCAGCCTGCACAAACACCCAACTCTCCGCCTCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCACCGGCCTCCACACCCTCAAAAACCTCATCACATTACTCTCTCACTCTCATCCTTCAAATCTCGACTCCGATTGCCAAGCCGTCGCTAACTCCGCCGTCTCTCACTTCAAAAAGGCCATTTCTCTCCTCGGCCGCTCACCCAGAACTGGCCACGCTCGATTCCGTCGAGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACGCCCATTCAACAAATCCCTCCGCCCGTTGAGCGCCTGGAATCCGCCACCACCATCAATTTCTCGTACTCCTCTGCTCCAAATGGCTCGTTTTTGACCTCGATTCCTGGTGCCGACTCTGAAATTAACCTCCAACACGAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGCTTCTTCTGGTCTCAAGAGGAAGTGCGGGTCTGAGAATTTGGGCTCCGGGAAGTGCTCTGTGTCCTCCGGTGGTCGTTGCCACTGCTCTAAGAAGAGGAAAATGAGGCTAAAAAGGGTGGTGAGAGTGCCAGCCATAAGCTCAAAGAACGCTGATATTCCTCCGGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGCTATTATAAGTGTAGCAGTCTAAGAGGATGTCCAGCTAGAAAGCACGTTGAGAGAGCCTCAGATGATCCAAGTATGTTAATAGTGACATACGAAGGCGACCATAATCACTCGCAATCTGTTGCAGAGGCCTCAAGTCTTATACTCGAATCTTGGTGA 849 50.77 MAVELLSACTNTQLSASMDQDSAVQEAATGLHTLKNLITLLSHSHPSNLDSDCQAVANSAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPVERLESATTINFSYSSAPNGSFLTSIPGADSEINLQHEPSSSSFQITDLSRASSGLKRKCGSENLGSGKCSVSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5451258 5453318 - CmoCh20G009780.1 Cmo20g00978 405295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00978 282 Pfam Plant zinc cluster domain 161 207 IPR018872 -
Cmo20g00978 282 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00978 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 92 IPR044810 GO:0003700
Cmo20g00978 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 104 281 IPR044810 GO:0003700
Cmo20g00978 282 SUPERFAMILY WRKY DNA-binding domain 205 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo20g00978 282 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00978 282 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo20g00978 282 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00978 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 92 - -
Cmo20g00978 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 104 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00982 Cmo20g00978 CCT
Cmo03g00982 Cmo20g00978 ECH
Cmo02g00504 Cmo20g00978 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01876 Cmo-Chr1:13576602 Cmo20g00978 Cmo-Chr20:5451258 4.96E-14 dispersed
Cmo03g00982 Cmo-Chr3:7396973 Cmo20g00978 Cmo-Chr20:5451258 8.06E-111 dispersed
Cmo09g00247 Cmo-Chr9:1115812 Cmo20g00978 Cmo-Chr20:5451258 3.20E-14 dispersed
Cmo09g00520 Cmo-Chr9:2424703 Cmo20g00978 Cmo-Chr20:5451258 1.37E-62 dispersed
Cmo11g00351 Cmo-Chr11:1720993 Cmo20g00978 Cmo-Chr20:5451258 9.92E-65 dispersed
Cmo02g00504 Cmo-Chr2:2757901 Cmo20g00978 Cmo-Chr20:5451258 3.75E-176 wgd
Cmo20g00978 Cmo-Chr20:5451258 Cmo07g00703 Cmo-Chr7:3171880 5.93E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11776 PF03106 WRKY 2.40E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00978 - - bhj:120089490 508.064