Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00981 ATGAGCTGCCATTGGAGCTGCACAGTTCTTGCTTTTCTTCTTCTTCAATCTTCTTGCTATGGACTGAATTTTGATGGGGTTCTCTTGCTTTCCTTCAAGTATGGCGTTTTGGATGACCCTCTTTTTGTTCTTCAGAACTGGAATTACTCCGATGAGACGCCCTGTTCATGGCGGGGAGTTCAATGCTCTGACGGTGGTGGTGGCGGCTCTAGAGTTACAGGTTTGTCTCTACCGAATTCTCAGCTGATGGGCTCTGTTTCTTCTGATCTGGGTCTGATTCAAAACCTTGAATCGGTTGATCTTTCTAATAATTCCTTTAATGGGTCTCTTCCCCGGTCTCTGTTTAACGCTACCATGCTCCGGTTTCTTGATTTGTCGGAGAATTTGATCTCCGGTGAGGTTCCGGCGGCGGTGGGTGGACTTGGGAATCTGCAAGTTCTTAACCTCTCTGGTAATGCTTTGGTCGGGAAGTTTCCGGGTGATCTTGCGGATTTGGGTAATCTTACGGTTGTGTCTTTGAAGAACAATTACATTTCCGGTGAAATTCTCGGTGGGTTTAAGACGGTGGAGGTTTTGGATCTGTCTTCTAATTTGATTGATGGAGCTTTGCCGTCTGATTTTGGTGGCGACAATTTACGTTATTTCAACATCTCGTACAATAAACTTTCCGGCAAAATCCCGCCGGATTTCGCTCATAATATTCCGGCCAACGCCACTATTGATCTCTCCTTCAATAACCTCACCGGAGAAGTCCCAGTTTCTGATGTGTTCATGAACCAAGAAGCAAAATCCTTCACCGGAAATCGCCAACTCTGCGGCGAGTTAACGACAACCCCATGTTCAATTCCTTCTTCGGCGGCGTCTCTCCCGCCGGCGATCGCTGCCATTCCACTAGACCGAAGTACTCCAGAAACGACATCGCCGGAAAAACAGAGCGAAACTCGGTTCAAACCCTCAACAATCGTCGCCATTGTACTGGGAGATATTGTCGGATTGGCAATTCTGTTCCTCCTGTTCTTCTACGTCTATCACTTGAAGAAAAAAAACAAATCCGTCGAAACCCATTTGAAAAACGAAGCCAATTTGGCCAAAGAGAGCTTCTCCACATCCTCATCGGAATCCAGAGGAGTTTCCCGATGGTCCTGTTTAAGAAAAACAGAGGACCCAGAAGAGGGAAATTCCGATCAGGCGAGTGCCGTGTCAATCCCCGGCCACCGTGAGACGGCAGAGGAGGGAGGAGACGGGAACAGAAAGGGGACTTTGGTGACGGTAAACGGCGGAGAGAAGGAGCTTGAACTGGAGGCGCTGCTGAAAGCATCAGCGTACATCCTGGGCGCCACCGGATCAAGCATAACATACAAAGCAGTGCTGGAAAACGGGACGGCGTTTGCCGTGAGAAGAATCGGAGATGGCGGCGTGGAAAAATTCAAAGATTTCGAGAATCAAATTCGTGTCGTAGCTAAATTGGTTCATCCAAATTTGGTTCGTGTTCGTGGGTTCTATTGGGGCGTCGATGAAAAGCTCATAATTTATGATTTTGTTCCTAATGGAAGCCTTGCCAATGCTCGTTACAGGAAAGTGGGTTCGTCGCCTTGTCATCTTCCATGGGAGCCTCGATTGAGAATAGCCAAAGGAGTAGCTCGTGGCCTTTCTTATCTCCATGACAAGAAGCATGTCCATGGCAACTTGAGGCCCACCAACATTCTTTTGGGTTTCGATATGGAGCCCAAGATCGGCGATTTCGGTCTCGACAAGCTCTTCTTGGGTGACTCGAGTTACAAGCCTGGTGGCTCAACTCGAAATTTTGGGAGTAAACGGTCTACCGCATCTCGAGATAGCTTCCAAGATTTCGTCACTGGACCAAGTCCAAGCTCGATTAATGGAGTGTCGCCGTACTTGCCACCAGAGTCACTTCGGAGCTTGAAGCCCAATTCAAAATGGGATGTGTACTCTTTTGGAGTGATATTGCTCGAGCTATTGACAGGGAAGATCATCGTGTTGGATGAGTTGAGCCAGGTACTTGGACTTGCAATTGAAGATAAGAGTCGAGCCCTAAAAATGACTGACATGGCGATTCGAGGTGAGATGGAGGGGAAAGAAGAAGCTTTGTTGTCTTGCTTTAAATTAGGATATAGTTGTGCATCACCTAACCCACAAAAGAGACCATCCATGAAGGAATGCTTGCAAGTTTTGGAGAAATTTCCAACCATATCCACTTCATCACACTATTATGGTCTCTAA 2241 47.3 MSCHWSCTVLAFLLLQSSCYGLNFDGVLLLSFKYGVLDDPLFVLQNWNYSDETPCSWRGVQCSDGGGGGSRVTGLSLPNSQLMGSVSSDLGLIQNLESVDLSNNSFNGSLPRSLFNATMLRFLDLSENLISGEVPAAVGGLGNLQVLNLSGNALVGKFPGDLADLGNLTVVSLKNNYISGEILGGFKTVEVLDLSSNLIDGALPSDFGGDNLRYFNISYNKLSGKIPPDFAHNIPANATIDLSFNNLTGEVPVSDVFMNQEAKSFTGNRQLCGELTTTPCSIPSSAASLPPAIAAIPLDRSTPETTSPEKQSETRFKPSTIVAIVLGDIVGLAILFLLFFYVYHLKKKNKSVETHLKNEANLAKESFSTSSSESRGVSRWSCLRKTEDPEEGNSDQASAVSIPGHRETAEEGGDGNRKGTLVTVNGGEKELELEALLKASAYILGATGSSITYKAVLENGTAFAVRRIGDGGVEKFKDFENQIRVVAKLVHPNLVRVRGFYWGVDEKLIIYDFVPNGSLANARYRKVGSSPCHLPWEPRLRIAKGVARGLSYLHDKKHVHGNLRPTNILLGFDMEPKIGDFGLDKLFLGDSSYKPGGSTRNFGSKRSTASRDSFQDFVTGPSPSSINGVSPYLPPESLRSLKPNSKWDVYSFGVILLELLTGKIIVLDELSQVLGLAIEDKSRALKMTDMAIRGEMEGKEEALLSCFKLGYSCASPNPQKRPSMKECLQVLEKFPTISTSSHYYGL 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5488146 5491044 - CmoCh20G009810.1 Cmo20g00981 405298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00981 746 Gene3D Phosphorylase Kinase; domain 1 417 513 - -
Cmo20g00981 746 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515
Cmo20g00981 746 PANTHER BNAC07G16060D PROTEIN 5 736 - -
Cmo20g00981 746 SUPERFAMILY L domain-like 27 273 - -
Cmo20g00981 746 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Cmo20g00981 746 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Cmo20g00981 746 CDD STKc_IRAK 444 734 - -
Cmo20g00981 746 MobiDBLite consensus disorder prediction 386 420 - -
Cmo20g00981 746 Gene3D Transferase(Phosphotransferase) domain 1 514 742 - -
Cmo20g00981 746 ProSiteProfiles Protein kinase domain profile. 438 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00981 746 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 736 - -
Cmo20g00981 746 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cmo20g00981 746 SUPERFAMILY Protein kinase-like (PK-like) 443 732 IPR011009 -
Cmo20g00981 746 Pfam Protein kinase domain 444 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00506 Cmo20g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00508 Cmo-Chr4:2523908 Cmo20g00981 Cmo-Chr20:5488146 0 dispersed
Cmo16g00366 Cmo-Chr16:1674648 Cmo20g00981 Cmo-Chr20:5488146 0 dispersed
Cmo18g01006 Cmo-Chr18:10958254 Cmo20g00981 Cmo-Chr20:5488146 1.96E-134 dispersed
Cmo02g00506 Cmo-Chr2:2768658 Cmo20g00981 Cmo-Chr20:5488146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75167 PF00069 Pkinase 4.90E-29 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00981 - - bhj:120088533 1269.99