Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00985 ATGGATTTTCTCTTTGTTTTGCTGCTCCTCCTTCTTGTTTTCCTTTTCCTGCAACAATTCATTACCCGCCGGCGAAATCTCCCGCCGAGCCCACCGTCTTTCCCGATCATCGGCCATCTCCACCTCCTTCAACGCCCAATCCACCGGAACTTCCACAACATCGCCGCCAAATACGGACCCATTTTCACTCTCCGATTCGGATCTCGCCTTGCCCTCATAGTCTCTTCACTCCAACTAGCCGAAGAATGCTTCACCAAAAACGATGTCGTTTTCGCCAACCGTCCGCGTTTACTCATCGGAAAATACCTCGGCTACAACTTCACCACCATCTCCACCACACCTTTCGGCGACCACTGGCGGAACCTCCGTCGTCTCACCTCTATGGAGATATTTTCCACGGCGCGTCTCAACGCAGCTCTCAGCATCCGTAAGGATGAAATCCGGCGATTATTGGTCAAACTCCATTCCGAATCGTTTGCTAAAGTGGAGTTGAAATCGATGTTTTCAGAATTGAGTTTCAACGTTGTGATGAGGGTTGTGACCGGAAAACGGTACTTCGGCGAGGAGGTTTCCAATGAAACAGAGGCGAGGGAGTTCAGAGAGCTTATGGATGAAACATCGCGTCATGGAGGAGCGTCGAATTGGGTCGATTTCATGCCGATTTTGAAATGGATTGGGTTTGGTGAATATGAGAAGAGTTTAGCCAAATTAACGAAAAGGGCCGATAAATTTATGCAGAAATTGGTTGAAGATCGCCGGAATCAGACAGGATTGCAAATAGAAAAACAGAGTACTCTGCTTGATCGGCTTCTGGAACTTCAGGCATCTGAGCCGGAATATTACTCCGATGAGATCATCAAAGGGGTCATTCTGGTTTTGCTGCGTGCCGGAGCTGACTCGACCTCTGTGACCATGGAATGGGCAATGACTCAATTACTCAACAATCCGGAGGTGATATCCAAAGCCAAAGCCGAGATTGACACCAAGATCGGTCGAGATCGACTCATTGATGAAGCAGATCTCGCTAACCTCCACTACCTTCAAGCCATTATTTCTGAGACCTTCCGGTTGCACCCTGCAGCGCCAATGCTCCTCACACACTATTCCTCCAATGACTGCACCGTCGCAGGCTACGATGTTCCTCGTGGGACGATGTTGTTGGTCAATGCTTGGGCAATTCACAGAGACCCCAAGCTGTGGGATGACCCCATGAGCTTCCGACCTGAGAGATTCTTAGGGGAAGGGAATGAGTTGCTGTGGAACAAGTTAATTCCTTTTGGGATGGGAAGGAGGGCTTGTCCTGGGGAAACTATGGCGCTAAGGTTGATAGGATTGAGTTTGGGGCTATTGATTCAGTGTTATGAGTGGAAGAATGTTGGATATGAAAAGGTAGACATGACTGAAGGTGGAGGTATCACCATTCAAAAAGTTCAGCCTCTGGAAACCATGTGTAGAGCTCTCCCAATTATGGATAAAGTTCTATCAAATGGTTTGGACTAA 1500 48.27 MDFLFVLLLLLLVFLFLQQFITRRRNLPPSPPSFPIIGHLHLLQRPIHRNFHNIAAKYGPIFTLRFGSRLALIVSSLQLAEECFTKNDVVFANRPRLLIGKYLGYNFTTISTTPFGDHWRNLRRLTSMEIFSTARLNAALSIRKDEIRRLLVKLHSESFAKVELKSMFSELSFNVVMRVVTGKRYFGEEVSNETEAREFRELMDETSRHGGASNWVDFMPILKWIGFGEYEKSLAKLTKRADKFMQKLVEDRRNQTGLQIEKQSTLLDRLLELQASEPEYYSDEIIKGVILVLLRAGADSTSVTMEWAMTQLLNNPEVISKAKAEIDTKIGRDRLIDEADLANLHYLQAIISETFRLHPAAPMLLTHYSSNDCTVAGYDVPRGTMLLVNAWAIHRDPKLWDDPMSFRPERFLGEGNELLWNKLIPFGMGRRACPGETMALRLIGLSLGLLIQCYEWKNVGYEKVDMTEGGGITIQKVQPLETMCRALPIMDKVLSNGLD 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5600442 5601941 - CmoCh20G009850.1 Cmo20g00985 405302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00985 499 Gene3D Cytochrome P450 16 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 Coils Coil 234 254 - -
Cmo20g00985 499 Pfam Cytochrome P450 28 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Cmo20g00985 499 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 492 - -
Cmo20g00985 499 SUPERFAMILY Cytochrome P450 28 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 5 492 - -
Cmo20g00985 499 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00985 499 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00157 Cmo-Chr5:679848 Cmo20g00985 Cmo-Chr20:5600442 2.24E-23 dispersed
Cmo20g00985 Cmo-Chr20:5600442 Cmo20g00988 Cmo-Chr20:5633295 0 dispersed
Cmo20g00985 Cmo-Chr20:5600442 Cmo20g00986 Cmo-Chr20:5621715 2.98E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00985 K13260 - csv:101210967 758.059