Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00988 ATGGCTCATATCTTGCTTTACATTTTCCTCTTTCCGATCACTTTCCTTTTAGCTCTCAAGTTCTTCCCACGCCATGTCAAAAACCTCCCACCAACCCCACTTTTTTCCCTTCCCATAATAGGCCATCTCCATCTCCTCAAACACCCCATCCACCGGACCCTTCACCATCTTTCAAACAAGCATGGCCATGTCTTCTCTCTCCGATTCGGCTCCCGTCTTGTCGTCGTCATATCATCTCCTTCCGCCGTCCGTGAATGCTTCACAAACAACGACATCGTTCTCGCAAATCGACCATTTTTGAACACGGGAAAGCACTTGACGTATAACTTCACGGTACTAGCCGTTGCCCCTTACGGTGAGCTTTGGCGTACCCTTCGCCGCATTAGTACTCGTGAGATTTTCTCAACAACTCGACTTGATTTGTCCTCGGGAATCCGACAAGATGAAGTCAAGCGATTGTTGTGTAAACTATGTCGTGACGATAATGTTGTTGTCGAGGTTCAACCTATGATTATGGATCTTACGTCGAATATTGTGATGAGGATGGTTGCGGGGAAGAGGTACTTTGGAGACGATGTGTCGGATGAAGAACAAGCGGAGAGATTTAGAGATGTTGTGAAGAGAGTAATGTTGTATGCTGGGGCAACAAATCCAGGAGATTTCATACCCTTATGGAATTGGATTGATCCAAGTGGTTTTGAGAAGAAGATTATGAAGGTTGGAGAAGAAGCTGATGCTATCTTTAATGGCTTGATTGATGAGATTAGGAACCAAAAAGGAAGTGGGAATACGATGATTGATCATTTGCTTCACTTGCAGGCCACACAATCTGAATATTTCAGTGATCAAATTATCAAAGGCCTCATACATGTTATACTCTTAGCAGGAATCGACACAACAGCCGTGACATTAGAATGGGCACTCTCGCACCTGCTGAACGATCCAGAGGTGATAAAGAAAGCGAGATTCGAGATAGAGAGTTGCACGGGACAAGACCGTCTAGTCAACGAAGAGGATTTGTCGAGTTTGAGTTATATGCAAGGAATAATCTTAGAGACTTTGCGGCTGACCCCAGCAGCTCCTTTGCTTGTGCCACACTGCGCATCTACGGATTGTAAAATCCAAGGCTATGATGTACCACGTGACACGATCGTATTTGTTAACGCTTGGGCGATACATAGAGATCCAAATCATTGGGAAGATGTCACAAGTTTTAAGCCAGAGAGGCATGAAAATGCAATAGAGTTATCTGATTCATACAAATTGTTACCATTCGGGTTGGGGAGGAGAGCGTGCCCCGGTGTAGGAATGGCTCAACGCATTGTTGGCTTGACCTTGGCTTCATTGATTCAGTGCTTTGATTGGGAAAGAATGGATAGCTCACCGGTTGATATGACCGAAGGCCAAGGGATCACTATGCCAAAAGCTCAGCCGTTAGTAGCCAAGTGCAAACCACGTCCTATCACGAGAGCTCTTATTAGTGAAGCAATTCACCCTATTTAG 1503 45.11 MAHILLYIFLFPITFLLALKFFPRHVKNLPPTPLFSLPIIGHLHLLKHPIHRTLHHLSNKHGHVFSLRFGSRLVVVISSPSAVRECFTNNDIVLANRPFLNTGKHLTYNFTVLAVAPYGELWRTLRRISTREIFSTTRLDLSSGIRQDEVKRLLCKLCRDDNVVVEVQPMIMDLTSNIVMRMVAGKRYFGDDVSDEEQAERFRDVVKRVMLYAGATNPGDFIPLWNWIDPSGFEKKIMKVGEEADAIFNGLIDEIRNQKGSGNTMIDHLLHLQATQSEYFSDQIIKGLIHVILLAGIDTTAVTLEWALSHLLNDPEVIKKARFEIESCTGQDRLVNEEDLSSLSYMQGIILETLRLTPAAPLLVPHCASTDCKIQGYDVPRDTIVFVNAWAIHRDPNHWEDVTSFKPERHENAIELSDSYKLLPFGLGRRACPGVGMAQRIVGLTLASLIQCFDWERMDSSPVDMTEGQGITMPKAQPLVAKCKPRPITRALISEAIHPI 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5633295 5635228 + CmoCh20G009880.1 Cmo20g00988 405305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00988 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Cmo20g00988 500 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 489 - -
Cmo20g00988 500 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 347 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 388 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 Gene3D Cytochrome P450 23 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 489 - -
Cmo20g00988 500 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 Pfam Cytochrome P450 30 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00988 500 SUPERFAMILY Cytochrome P450 30 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00973 Cmo-Chr3:7332351 Cmo20g00988 Cmo-Chr20:5633295 0 dispersed
Cmo03g00974 Cmo-Chr3:7335718 Cmo20g00988 Cmo-Chr20:5633295 2.51E-58 dispersed
Cmo08g00037 Cmo-Chr8:189769 Cmo20g00988 Cmo-Chr20:5633295 0 dispersed
Cmo09g00261 Cmo-Chr9:1159525 Cmo20g00988 Cmo-Chr20:5633295 3.32E-55 dispersed
Cmo17g01340 Cmo-Chr17:10478187 Cmo20g00988 Cmo-Chr20:5633295 2.71E-171 dispersed
Cmo20g00985 Cmo-Chr20:5600442 Cmo20g00988 Cmo-Chr20:5633295 0 dispersed
Cmo20g00986 Cmo-Chr20:5621715 Cmo20g00988 Cmo-Chr20:5633295 4.55E-140 dispersed
Cmo20g00988 Cmo-Chr20:5633295 Cmo20g00991 Cmo-Chr20:5661890 0 dispersed
Cmo20g00987 Cmo-Chr20:5628950 Cmo20g00988 Cmo-Chr20:5633295 1.04E-63 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00988 K13260 - csv:105434396 823.928