Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00989 ATGTATCCCGATGATCAGCGGCGGCAGCCGTTGTTGGAGGAGGAAGATGAAGAGACTGCTTACAATTTAACGGAGAAGGTTGTGGTTGTTGGGATCGACGAAGCGGAGTCCGACTTGGATGTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTTTTGATGAGTATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACAGCCATGGGGCTTTTGATCCAGTTGCTCTCGGCCAGGCTTGGTGTTGCCACAGGCAAGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCTTCTTGGGCGAGAATTTTGCTGTGGGTCATGGCAGAGTTAGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTTATAATCACTGCTTTTGATTGTTTTATCTTCCTGTTTCTTGAGAACTATGGTGTGAGGAAACTTGAGGCTGTTTTTGCTGTTCTTATTGCTACCATGGCACTCTCATTTGCTTGGATTTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCAGTAGCTGTTGTGGGGTGTATCATTATGCCTCATAACGTGTTTCTGCACTCCGCTCTCGTGCAGTCACGAGACGTCAATCCGAGCAAGAAAGGGCGGGTTCGAGAAGCTCTTAGATACTATTCCATTGAGTCCACTCTTGCTCTTTTCGTGTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCTAGTAGCATTGGTCTTGTAAATGCAGGGCAATATCTTCAAGATAAATATGGTGGAGGGCTCTTCCCCATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGGGTGGCTTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCGATTGTGCCAACTATGATTGTCGCTCTCGCGTTCGAAACTTCTGATTCGATGGTCGATGTTCTTAATGAATGGCTCAATGTCCTTCAGTCAATTCAGATACCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCCAAGGAACATCTAATGGGCAGTTTCAGAATTGGCCCCATTTTAAAGTTGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAACGGATATCTTTTGGTGAGCTTCTTCTCATCAGAAGTGAACGGAGTGCTCGTTGCCATTTTCGTGTTCGTCTTCATCGCTGCATATCTCTCCTTTGTCGTTTACCTCGTCTATCGAAGCATTTCATTTTCAAGTTGGCACAGCTTCATTAACCGGAAGACTTCCACGGACAACGAAAACTGA 1533 45.79 MYPDDQRRQPLLEEEDEETAYNLTEKVVVVGIDEAESDLDVGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPSWARILLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITAFDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWIFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVNPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALAFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFRIGPILKLSSWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFVFIAAYLSFVVYLVYRSISFSSWHSFINRKTSTDNEN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5643440 5646670 + CmoCh20G009890.1 Cmo20g00989 405306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00989 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo20g00989 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 508 - -
Cmo20g00989 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02499 Cmo-Chr4:18379971 Cmo20g00989 Cmo-Chr20:5643440 1.03E-76 dispersed
Cmo14g01073 Cmo-Chr14:5910482 Cmo20g00989 Cmo-Chr20:5643440 3.94E-106 dispersed
Cmo02g00515 Cmo-Chr2:2860696 Cmo20g00989 Cmo-Chr20:5643440 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00989 K21398 - csv:101211711 932.554