Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00999 ATGAACAAAGCCACTTTCGAGTTACGTGATGATAGAGCCCAAATGCATTGTGCAATGGGGGTATCATTACTCAAAGTACTTCTCAGACATATTTCATCATTTCTTCAACTTTCATCTACTGACTTCATAAATTTACAACCAACTCTGAAGTACTTCCACAAAATAGAAGGGATCTTCAAACTATTGAGACCAATACTAGATGCAGTTGTTGATTCAGATATAGCTTCCGATGAAGAGCTTACTAAGGCGTTTGAAGAACTCGATCATTCAATTGATGAACTAAGGGCGCTCTTCGAAAATTGGCAACCGTTGTCGAGTAAAGTATACTTTGTATTGCAAAGTGAAGCATTGATATCAAAGATTGGGAAATCTTGCTTAGATATATTCCAGCTTTTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCATCATCTCTTGAGCACTGCGTCCAAAAAATTAAGCATTTTGGAAAGGAAGAAATGTCTTCTGTTATTAAAGATGCCATAAGGAATGAAGTAGAGGGCATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCAGATTTTCTGAGCTTGAGATCTAATCAGGAGATATTAATTGAGGCTGTAACACTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCTGAGGGCATTGATCAAATGGTTGCTCTTGTAACCCATATGCATGAACGGTTTATTATGATAAATCAATCCCAAAATTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTGATGACAGATCCAGTTATTGTAGCATCGGGGCAGACGTACGAGCGGGTATTTATTAAAAATTGGATCGATCTGGGGATCAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCGAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTAAAATTGTCTGATCCTTCGAGGTCGGTGAACTTAAACCAGCTTTCGCCTGTTCTCGCTGTGAACTTTGAGTCTGATACCCATCGAGAGCCCGTTTTTCCTCATTCCCCTGGTTACCAACCGATGTCCCCCCAGTCAACCAGGTCTCCAGGTTCAGGAAAGAACATGAACTCGCTTGGGGTAAGCTATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTATCAAATGATGCTGGTGATGAACGTGAGATTGATGTTAGTAGACTGTTGCTATCAAGCTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTATGATTTGGTTGCTAAACCGTCTACGTCACCATCTAAAGCCAATGTTCCAGATACCAGTGGCGAGGATGAACCGTCTCATAGTCATAACAGGACCGCCTCCACCTCTAGTGCAGTCTCGAATACTAATCTCTCTCAAGGAACTTCAGGGGAACCCAATGAATCTGTCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTACCTCGACTACCAACCACAGAGAACCAGATCGGGAGCATCCACCGAGAGTAGCTGACCCAAGATCTCGAGGTAATACAATGTGGCTCCGACCATCAGAGAGGTTTGCTTCTAAGATGATTGCACCGTCTGCTAATGAGATGAGGCCTGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGAAACTTTGAGAGGAGCTACGGCTGAACTACGGCTACTGGCCAGACATAACATGGATAATCGAATAGTGATCGCTCAATCCGGGGCCATCGAATATTTGGTTGATTTGCTCCTGTCTGCAGACTCGAAGCTACAGGAGAATGCTGTGACAGCTCTTCTAAACTTATCGATCAATGATAATAACAAAAATGTCATCGCCCAGGCTAATGCAATTGAACCATTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTAGTTGAATTACTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCGATATTCCACGAGAACAAGGCTAGAATCGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCTGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTCACCACGATTCCCGAGGGTCGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTTGTCGAGGTCGTCGAGTTGGGTTCTGGGAGAGGAAAGGAAAATGCAGCAGCAGCATTATTGCAGCTTTGCACAACAAGCAGTAGACATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCTTTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTTAGCCATTTCAGAAGCCAGAGACATGGGAATTCGGGAAGGGGGTAA 2544 43.79 MNKATFELRDDRAQMHCAMGVSLLKVLLRHISSFLQLSSTDFINLQPTLKYFHKIEGIFKLLRPILDAVVDSDIASDEELTKAFEELDHSIDELRALFENWQPLSSKVYFVLQSEALISKIGKSCLDIFQLFQSSNENLPEELSSSSLEHCVQKIKHFGKEEMSSVIKDAIRNEVEGIAPSSDVLVKLADFLSLRSNQEILIEAVTLEKLKESAEQAENTEEAEGIDQMVALVTHMHERFIMINQSQNSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGINVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNQLSPVLAVNFESDTHREPVFPHSPGYQPMSPQSTRSPGSGKNMNSLGVSYRDGSSSLLSHSFSEDSLSNDAGDEREIDVSRLLLSSSEDQMAKLEENGYDLVAKPSTSPSKANVPDTSGEDEPSHSHNRTASTSSAVSNTNLSQGTSGEPNESVSDAAGESKSEPLAATSTTNHREPDREHPPRVADPRSRGNTMWLRPSERFASKMIAPSANEMRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLARHNMDNRIVIAQSGAIEYLVDLLLSADSKLQENAVTALLNLSINDNNKNVIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLTTIPEGRSAIGQEGGIPVLVEVVELGSGRGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5999322 6003074 + CmoCh20G009990.1 Cmo20g00999 405316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00999 847 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Cmo20g00999 847 Coils Coil 415 435 - -
Cmo20g00999 847 MobiDBLite consensus disorder prediction 511 525 - -
Cmo20g00999 847 Gene3D - 546 843 IPR011989 -
Cmo20g00999 847 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 843 - -
Cmo20g00999 847 CDD RING-Ubox_PUB 258 300 IPR045210 -
Cmo20g00999 847 SMART arm_5 756 796 IPR000225 GO:0005515
Cmo20g00999 847 SMART arm_5 716 755 IPR000225 GO:0005515
Cmo20g00999 847 SMART arm_5 798 838 IPR000225 GO:0005515
Cmo20g00999 847 SMART arm_5 593 633 IPR000225 GO:0005515
Cmo20g00999 847 SMART arm_5 634 674 IPR000225 GO:0005515
Cmo20g00999 847 SMART arm_5 675 715 IPR000225 GO:0005515
Cmo20g00999 847 PANTHER U BOX DOMAIN-CONTAINING 25 843 - -
Cmo20g00999 847 SUPERFAMILY RING/U-box 242 330 - -
Cmo20g00999 847 MobiDBLite consensus disorder prediction 364 404 - -
Cmo20g00999 847 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Cmo20g00999 847 MobiDBLite consensus disorder prediction 355 411 - -
Cmo20g00999 847 SUPERFAMILY ARM repeat 564 836 IPR016024 -
Cmo20g00999 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Cmo20g00999 847 Pfam Armadillo/beta-catenin-like repeat 677 714 IPR000225 GO:0005515
Cmo20g00999 847 Pfam Armadillo/beta-catenin-like repeat 634 673 IPR000225 GO:0005515
Cmo20g00999 847 Pfam Armadillo/beta-catenin-like repeat 595 632 IPR000225 GO:0005515
Cmo20g00999 847 MobiDBLite consensus disorder prediction 466 510 - -
Cmo20g00999 847 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 604 646 IPR000225 GO:0005515
Cmo20g00999 847 MobiDBLite consensus disorder prediction 441 455 - -
Cmo20g00999 847 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 768 IPR000225 GO:0005515
Cmo20g00999 847 Coils Coil 197 227 - -
Cmo20g00999 847 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Cmo20g00999 847 MobiDBLite consensus disorder prediction 436 536 - -
Cmo20g00999 847 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00686 Cmo20g00999 CCT
Cmo02g00518 Cmo20g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00686 Cmo-Chr7:3089791 Cmo20g00999 Cmo-Chr20:5999322 3.15E-135 dispersed
Cmo08g00285 Cmo-Chr8:1768181 Cmo20g00999 Cmo-Chr20:5999322 7.26E-164 dispersed
Cmo12g00537 Cmo-Chr12:3273369 Cmo20g00999 Cmo-Chr20:5999322 3.99E-84 dispersed
Cmo17g01302 Cmo-Chr17:10215174 Cmo20g00999 Cmo-Chr20:5999322 2.00E-62 dispersed
Cmo20g00999 Cmo-Chr20:5999322 Cmo01g00619 Cmo-Chr1:3195460 3.61E-26 dispersed
Cmo02g00518 Cmo-Chr2:2887263 Cmo20g00999 Cmo-Chr20:5999322 0 wgd
Cmo20g00999 Cmo-Chr20:5999322 Cmo07g00683 Cmo-Chr7:3085127 1.29E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00999 - - cmax:111483613 1506.12