Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g01005 | ATGGAGTGGGTTCGAGGCCACCAACTGGGTCGCGGAAGTTTTGCCACAATCTATTTAGCCAAGCTTACAAATGGGTCCGATCAGCATCTGCCATTAATGGCGGTCAAATCCTCTGTTTCTCAATCCTCTGTTTCGCTCAAGAACGAGAAGCGAATTCTGGATCGAATTGGGAGTTGCCCGCAAATCATCGCTTGTTTTGGGGATGGATTTAGTGTTGAGAAAGATGGGGAGAAGTATTATAATCTGTTATTGGAGTATGCCAATGGCGGAAGCCTTGCGGATGCTCTGAAAATCCACGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAGGGGGATTCTTTGTGGGCTTCGGTATATTCATTGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCCAATGTCTTAATTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAACCCGCGGGAAAAATGACGGCGGCGGAAACAGAGGAGAGATTTCAGTGGAGAGGGACTCCGATGTATATGTCACCGGAGAATGTCAACGGCGGTGAGTATGAGCCGCCGTGTGATATTTGGGCATTAGGTTGCGCCGTCGTGGAGATGGTGGCAGGAAAACCGGCGTGGAGAGTTGGGCCGGAAACGGATATATTCGCGCTGATGATGAGAATCGGAGTCGGCGACGAAGTACCGGAGGTTCCGGAGAATCTATCAGCGGAGGGGAAAGATTTTCTCCGGCGATGTTTTGTCAAGGATCCTAGAAATCGGTGGACGGCGGAGATGCTTTTGAATCACCCATTTGTCGCTGGTGGCGGCGGTACTGTTACATTGAAGGAAGCGGAACTGGCGACGGAGTCGCCGACGGGTCCTTTCGATTTCCCGGAATTCGTTTGCTCCGAACAAGGTCCGGAAGAGTTGAGTTCGTGTTGGGGTAATTCGTCGCCGGAGATGATGAGGAGGAGGGTGGGGGAATTGGTAACCGAGAAGCCATTGCATTGGTCTGTGATGGATAGTTGGGTGACAGTGAGCGGTGGGCGTCGGTTGGAAGATGGTGGTTTCCATTTGAAGTTACAGAACCCCATCCACGACACAATTCCGGAAGATGAGTATGATGCTCTCGTTGCAAAGCGTGGTGAAGATGCCCTAGGGTTTATTTTTGACGACGACGGTCTTGGATTTGGAGACGAAGGTGAGGAAGCGGATTGGCCGAAATCTGGGGAATTTGATGCAAAGGAGGACTTGATTTCTCAAATCAACCTGGATTCGGTTGGGGAATCACACAGTTCTTCAATCAAGGAAGATGTAATTGAAGATGGTATGCCAATTATGGTTGAAACGAAAGCAGAACCGTTCGTGAAGAAGGAGGGGAAGGGAGAGGAATTGTTGATTCTGCAGCAGAAATTCCTGGTTTTCAACGAAAGAATTGTTAGCATATTTTCTCTCCAAGTAAACAGAGATTTCAAAAGCCTGGTATGCCTACACATTTTACTATCATCCCTAAGCTTGATGGAGGCATATGATAGAAATTTGAAGGTTGGATCAAATGTTCTAATCTGCGAGGAGCGAGTAGTGAAAGGGCCTTGTTCAATCGATTAA | 1599 | 48.28 | MEWVRGHQLGRGSFATIYLAKLTNGSDQHLPLMAVKSSVSQSSVSLKNEKRILDRIGSCPQIIACFGDGFSVEKDGEKYYNLLLEYANGGSLADALKIHGGGLPEFDVRRYTRGILCGLRYIHCNGFVHCDLKLSNVLIFGNGDVKIADFGLAKPAGKMTAAETEERFQWRGTPMYMSPENVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPETDIFALMMRIGVGDEVPEVPENLSAEGKDFLRRCFVKDPRNRWTAEMLLNHPFVAGGGGTVTLKEAELATESPTGPFDFPEFVCSEQGPEELSSCWGNSSPEMMRRRVGELVTEKPLHWSVMDSWVTVSGGRRLEDGGFHLKLQNPIHDTIPEDEYDALVAKRGEDALGFIFDDDGLGFGDEGEEADWPKSGEFDAKEDLISQINLDSVGESHSSSIKEDVIEDGMPIMVETKAEPFVKKEGKGEELLILQQKFLVFNERIVSIFSLQVNRDFKSLVCLHILLSSLSLMEAYDRNLKVGSNVLICEERVVKGPCSID | 532 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 6127972 | 6131444 | + | CmoCh20G010050.1 | Cmo20g01005 | 405322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g01005 | 532 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 290 | - | - | |
Cmo20g01005 | 532 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 320 | - | - | |
Cmo20g01005 | 532 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524 | |
Cmo20g01005 | 532 | SMART | serkin_6 | 3 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g01005 | 532 | ProSiteProfiles | Protein kinase domain profile. | 3 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g01005 | 532 | CDD | STKc_MAPKKK | 2 | 269 | - | - | |
Cmo20g01005 | 532 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 | 1 | 320 | - | - | |
Cmo20g01005 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 286 | IPR011009 | - | |
Cmo20g01005 | 532 | Pfam | Protein kinase domain | 5 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo20g01005 | 532 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo20g01005 | 532 | Pfam | DNA polymerase alpha subunit p180 N terminal | 350 | 400 | IPR024647 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00180 | Cmo-Chr2:852639 | Cmo20g01005 | Cmo-Chr20:6127972 | 1.06E-59 | dispersed | |
Cmo02g00526 | Cmo-Chr2:2952045 | Cmo20g01005 | Cmo-Chr20:6127972 | 0 | dispersed | |
Cmo07g00716 | Cmo-Chr7:3227217 | Cmo20g01005 | Cmo-Chr20:6127972 | 3.97E-131 | dispersed | |
Cmo11g01890 | Cmo-Chr11:13141047 | Cmo20g01005 | Cmo-Chr20:6127972 | 2.40E-56 | dispersed | |
Cmo17g00885 | Cmo-Chr17:8041305 | Cmo20g01005 | Cmo-Chr20:6127972 | 1.19E-58 | dispersed | |
Cmo17g01223 | Cmo-Chr17:9736266 | Cmo20g01005 | Cmo-Chr20:6127972 | 1.47E-18 | dispersed | |
Cmo19g00939 | Cmo-Chr19:8635652 | Cmo20g01005 | Cmo-Chr20:6127972 | 2.34E-59 | dispersed | |
Cmo20g01005 | Cmo-Chr20:6127972 | Cmo03g00571 | Cmo-Chr3:5572843 | 1.15E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75168 | PF00069 | Pkinase | 6.90E-53 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g01005 | - | - | csv:101214756 | 572.778 |