Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01005 ATGGAGTGGGTTCGAGGCCACCAACTGGGTCGCGGAAGTTTTGCCACAATCTATTTAGCCAAGCTTACAAATGGGTCCGATCAGCATCTGCCATTAATGGCGGTCAAATCCTCTGTTTCTCAATCCTCTGTTTCGCTCAAGAACGAGAAGCGAATTCTGGATCGAATTGGGAGTTGCCCGCAAATCATCGCTTGTTTTGGGGATGGATTTAGTGTTGAGAAAGATGGGGAGAAGTATTATAATCTGTTATTGGAGTATGCCAATGGCGGAAGCCTTGCGGATGCTCTGAAAATCCACGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAGGGGGATTCTTTGTGGGCTTCGGTATATTCATTGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCCAATGTCTTAATTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAACCCGCGGGAAAAATGACGGCGGCGGAAACAGAGGAGAGATTTCAGTGGAGAGGGACTCCGATGTATATGTCACCGGAGAATGTCAACGGCGGTGAGTATGAGCCGCCGTGTGATATTTGGGCATTAGGTTGCGCCGTCGTGGAGATGGTGGCAGGAAAACCGGCGTGGAGAGTTGGGCCGGAAACGGATATATTCGCGCTGATGATGAGAATCGGAGTCGGCGACGAAGTACCGGAGGTTCCGGAGAATCTATCAGCGGAGGGGAAAGATTTTCTCCGGCGATGTTTTGTCAAGGATCCTAGAAATCGGTGGACGGCGGAGATGCTTTTGAATCACCCATTTGTCGCTGGTGGCGGCGGTACTGTTACATTGAAGGAAGCGGAACTGGCGACGGAGTCGCCGACGGGTCCTTTCGATTTCCCGGAATTCGTTTGCTCCGAACAAGGTCCGGAAGAGTTGAGTTCGTGTTGGGGTAATTCGTCGCCGGAGATGATGAGGAGGAGGGTGGGGGAATTGGTAACCGAGAAGCCATTGCATTGGTCTGTGATGGATAGTTGGGTGACAGTGAGCGGTGGGCGTCGGTTGGAAGATGGTGGTTTCCATTTGAAGTTACAGAACCCCATCCACGACACAATTCCGGAAGATGAGTATGATGCTCTCGTTGCAAAGCGTGGTGAAGATGCCCTAGGGTTTATTTTTGACGACGACGGTCTTGGATTTGGAGACGAAGGTGAGGAAGCGGATTGGCCGAAATCTGGGGAATTTGATGCAAAGGAGGACTTGATTTCTCAAATCAACCTGGATTCGGTTGGGGAATCACACAGTTCTTCAATCAAGGAAGATGTAATTGAAGATGGTATGCCAATTATGGTTGAAACGAAAGCAGAACCGTTCGTGAAGAAGGAGGGGAAGGGAGAGGAATTGTTGATTCTGCAGCAGAAATTCCTGGTTTTCAACGAAAGAATTGTTAGCATATTTTCTCTCCAAGTAAACAGAGATTTCAAAAGCCTGGTATGCCTACACATTTTACTATCATCCCTAAGCTTGATGGAGGCATATGATAGAAATTTGAAGGTTGGATCAAATGTTCTAATCTGCGAGGAGCGAGTAGTGAAAGGGCCTTGTTCAATCGATTAA 1599 48.28 MEWVRGHQLGRGSFATIYLAKLTNGSDQHLPLMAVKSSVSQSSVSLKNEKRILDRIGSCPQIIACFGDGFSVEKDGEKYYNLLLEYANGGSLADALKIHGGGLPEFDVRRYTRGILCGLRYIHCNGFVHCDLKLSNVLIFGNGDVKIADFGLAKPAGKMTAAETEERFQWRGTPMYMSPENVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPETDIFALMMRIGVGDEVPEVPENLSAEGKDFLRRCFVKDPRNRWTAEMLLNHPFVAGGGGTVTLKEAELATESPTGPFDFPEFVCSEQGPEELSSCWGNSSPEMMRRRVGELVTEKPLHWSVMDSWVTVSGGRRLEDGGFHLKLQNPIHDTIPEDEYDALVAKRGEDALGFIFDDDGLGFGDEGEEADWPKSGEFDAKEDLISQINLDSVGESHSSSIKEDVIEDGMPIMVETKAEPFVKKEGKGEELLILQQKFLVFNERIVSIFSLQVNRDFKSLVCLHILLSSLSLMEAYDRNLKVGSNVLICEERVVKGPCSID 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6127972 6131444 + CmoCh20G010050.1 Cmo20g01005 405322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01005 532 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
Cmo20g01005 532 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 320 - -
Cmo20g01005 532 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cmo20g01005 532 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01005 532 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01005 532 CDD STKc_MAPKKK 2 269 - -
Cmo20g01005 532 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 320 - -
Cmo20g01005 532 SUPERFAMILY Protein kinase-like (PK-like) 3 286 IPR011009 -
Cmo20g01005 532 Pfam Protein kinase domain 5 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01005 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cmo20g01005 532 Pfam DNA polymerase alpha subunit p180 N terminal 350 400 IPR024647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00180 Cmo-Chr2:852639 Cmo20g01005 Cmo-Chr20:6127972 1.06E-59 dispersed
Cmo02g00526 Cmo-Chr2:2952045 Cmo20g01005 Cmo-Chr20:6127972 0 dispersed
Cmo07g00716 Cmo-Chr7:3227217 Cmo20g01005 Cmo-Chr20:6127972 3.97E-131 dispersed
Cmo11g01890 Cmo-Chr11:13141047 Cmo20g01005 Cmo-Chr20:6127972 2.40E-56 dispersed
Cmo17g00885 Cmo-Chr17:8041305 Cmo20g01005 Cmo-Chr20:6127972 1.19E-58 dispersed
Cmo17g01223 Cmo-Chr17:9736266 Cmo20g01005 Cmo-Chr20:6127972 1.47E-18 dispersed
Cmo19g00939 Cmo-Chr19:8635652 Cmo20g01005 Cmo-Chr20:6127972 2.34E-59 dispersed
Cmo20g01005 Cmo-Chr20:6127972 Cmo03g00571 Cmo-Chr3:5572843 1.15E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75168 PF00069 Pkinase 6.90E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01005 - - csv:101214756 572.778