Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01026 ATGCTTTCCTCTGAAGCCATGGCTGATACTAGAGATACTCCCATGTCTTCAATGTTCTGTAGAAGGAATCCCTCAAGACTCATCATTCAGGGGCTGTTGCTGTTCTCATTGTTGAGGTTAAATTATGCATCCACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGTTGCACTGAATGATTCCAATCATCAAATAACTGATTGGAACTATCACTTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAACGTTATATCATTGAGCTTGGGTTCAGCAGGATTTTCAGGATCACTCTCTCCTTCAATTACAAAACTCAAATATTTGGCCAGTCTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCCATCCCTGCAGCTTGGGGTCAACTTGCTGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCTCTATTCTTTTCAATTCCAATGTTCAACTTTTCAAGAACTGGATTAAACTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCGACCTCTCCCCATCGAGCTTCTGTAAAGAATTCTAAGGTTGGGGTAGTGGCAAGTACTGCAAGCTGTGGGGGATTCATTCTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAGGCTTAAGGATTCCATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGTTGCGGGAAATCCAGCTTGCGACCGATAACTTTAACGAGACGAACATCATTGGCCAAGGAGGGTTTGGAAAAGTATATAAAGGAATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACTGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTCCGGTTGATCGGTTTCTGCACGACTACGTCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGCGTGGCTCATCGCTTGAGAGATTTAAAACCAGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACAGATAGCCTTTGGTGCAGCCCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATCCACCGTGATCTGAAGGCTGCAAACATATTATTAGACGACGACTTCGAAGCTGTTCTTGGAGATTTCGGATTAGCCAAGCTAGTCGATACTAAAGTAACTCATATTACCACTCAAGTGCGCGGCACAATGGGTCATATCGCCCCGGAATACTTGTCCACTGGTAAGTCATCCGAAAAGACTGATGTTTTTGGATATGGTATCACCCTTCTTGAGCTTGTCACCGGTCAGCGCGCAATAGATTTCTCCCGTCTTGAAGAGGAGGAAGACGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAACAGGCTTGAAGATGTTGTGGACAAGAATTTAACAAGCTACGATGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCGTTGCTTTGCACTCAAGGCTCGCCCGAGGACCGGCCGACGATGGCAGAAGTTGTGAACCTACTACATGGAGAAGGGCTAGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAGGTATCCCTTTTGTGTCACAAATTTGTTTGGGGAGAAGAGTCAAGTCATGATCAAGAAGCCATACAGTTATCTAAAGCCAGATAG 1830 43.77 MLSSEAMADTRDTPMSSMFCRRNPSRLIIQGLLLFSLLRLNYASTDPDVEGEALVDLLVALNDSNHQITDWNYHFVSPCFSWSHITCRNGNVISLSLGSAGFSGSLSPSITKLKYLASLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLAGLKHLDLSDNNLTGEVPALFFSIPMFNFSRTGLNCGFRLDKPCVSTSPHRASVKNSKVGVVASTASCGGFILLSIGAFFAYRCFYMHRLKDSMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKQIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLTSYDEKEVENIVQVALLCTQGSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHKFVWGEESSHDQEAIQLSKAR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8810084 8817108 + CmoCh20G010260.1 Cmo20g01026 405343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01026 609 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Cmo20g01026 609 SMART serkin_6 287 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01026 609 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Cmo20g01026 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 32 609 - -
Cmo20g01026 609 SUPERFAMILY Protein kinase-like (PK-like) 268 560 IPR011009 -
Cmo20g01026 609 SUPERFAMILY L domain-like 60 186 - -
Cmo20g01026 609 ProSiteProfiles Protein kinase domain profile. 287 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01026 609 PANTHER LRR RECEPTOR-LIKE KINASE 32 609 - -
Cmo20g01026 609 Pfam Leucine rich repeat N-terminal domain 49 87 IPR013210 -
Cmo20g01026 609 Gene3D Ribonuclease Inhibitor 47 206 IPR032675 -
Cmo20g01026 609 Gene3D Transferase(Phosphotransferase) domain 1 364 580 - -
Cmo20g01026 609 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Cmo20g01026 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Cmo20g01026 609 Pfam Protein kinase domain 288 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00876 Cmo-Chr4:4390657 Cmo20g01026 Cmo-Chr20:8810084 0 dispersed
Cmo20g01026 Cmo-Chr20:8810084 Cmo04g00411 Cmo-Chr4:2031640 2.39E-177 dispersed
Cmo20g01026 Cmo-Chr20:8810084 Cmo16g00762 Cmo-Chr16:3822870 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75169 PF00069 Pkinase 6.90E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01026 - - bhj:120088289 1108.59