Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01028 ATGGAGGAGGCGACGATATCTGCGAAAACGCTGCCGTTTCTGGCTTTCTTCTTCCTTCTTGGACTTCATAACACCTTCTCCGACACAGACCCAAACGATGTTCAAGTCCTGCTATCGTTGAAAGAGGAATGGAAGAACACACCACCAACATGGAAGACATCAGTTGATCCATGTGGAGATCTCTGGGAAGGAGTTACTTGCGATGGTTCTAGAGTCACTGAACTAAAATTGCCGTCTATGGGCCTTGAAGGTCATCTTAGCGGCGCCATTGGAGACCTTACTGAACTAACAACATTGGACCTGTCATTTAACGAAAATCTCACTGGTCCGCTCTCTCCTCGGTTGGGGGATTTGCGAAATTTGCGGTCCTTAATCCTAGCAGCATGTGGCTTCAGTGGGAATATTCCCGAACATTTGGGCAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCGAACAAACTCATTGGCCCTATACCGCCTACACTTGGAAAACTCTCCAAACTTGTTTTGCTAGATTTGATGGAGAATAAGTTGAATGGACCTCTCCCTGTATCAACTTCTGATTCCCCAGGTCTGGATCTTCTTCACCAAGCACAACACTTTCACTTGAGTAAGAACAAGCTATCAGGCTCTATACCACCTAAGCTTTTTAGCGCTGATATGAAGTTAATACACATAGTGTTTGATCAAAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACGCCCTTGAAGTTCTCCGACTTGATCGGAACTCTCTAACAGGAATGGTCCCATCAAATCTCACCAAATTAAGACAGATCATGCACTTGAATTTAGCACACAATAAACTAACAGGTCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTGAGTAACAACTCATTTGATACATCAGCAGCCCCGGATTGGTTCTCAAGCTTACCATCTCTCACCACTTTGATCGTTGAATTTGGACAACTGAAAGGATCAGTCCCAGAAACCATTTTCAGCTTGCCACAAATACAACAAATAAAACTGAAGTACAATTTATTTGATGGGACATTGAATATGGTTGGCAACATCAATGAGCATCTGGAGCTTGTTGATTTGGAAAATAATCGCATTACCGAACTTGCGATATCTGGATACAACAAAACTTTGATGCTTGGAGGAAATCCTGCGTGTAATGTTGTTCATATCTTAGAAGAAAATGCTTGTCAAAATTCACAACTGGCTCCAAAGCCGAATTTTCCCAGTCATGTCAACTGTGAAACTAGACCGTGCTCCACTGGCGAGAAGAATAACCCTCAAAGCTGTGAGTGTCAGTGTCCCTATGTAGGGTCTTTGCACTTCAGAGGACCCTCGATCAGGGAATTGTCAAATGATACCTTGTTTCTGTTACTGAAAGACAAACTCTCGGAGAAACTACATCTTCCTATTGGTTCCATTGTTATTCAAAACGCCGAGTTCGATAGTGATGATTACCTTCAGATACAACTTGAACTTTATCCACCCTTTGGAAAGGTTTTCAATTACTCAGAAATTTTGAGGATTGCGTCTGCATTGAGTCATCAAACTTTCCTTCTTCCGGCAGAGTTTGGATCATTTTATTTCATTCCACCTCAGTACCCATTTTCTGCTCCAGATGAGAGAAATCTTGGTAGCAATAGGTGGCTTATTGGGATTGCAATTGGTTGTTCCTTACTGGTCCTAAGCCTCATTGGACTTGGAATATATGCAATTAAGCAGAAGAAACGAGTATCAAAGGCGATTTCATTGAGCAGGCCATTTAGTTCTTGGTCATCGACTGAACAAGCAAGTGGAGACGCACCACAATTGAAGGGAGCAATATATTTTTCTTATGATGAGCTTAGAAAGATGACAAATAATTTCTCCATAAGTAATGAGATAGGAGTTGGAGGGTATGGAAAGGTTTATAGAGGAATGACTGGGTATGGACAAATGTTCGCAATCAAAAGAGCTAGGCAAGGATCAAAGCAGGGTGCATTTGAGTTCAAGACTGAGATTGAATTACTTTCACGAGTTCATCACAAGAATCTAGTAGCCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTAATGGATCACTTCAAGACATCCTTGGGACTTCTTATATTCATCTTGATTGGAAAAGAAGACTCATGATAGCACTCGACTCTGCAAGAGGAATAGCTTACCTTCACGAGTTTGCAAATCCTCCTGCAATCCATAGAGATATCAAGTCTTCCAATATTCTCTTGGATGAATATTTAAATGCGAAGGTTGCAGATTTTGGCCTGTCTAAGCCTGCATTTGACCATGGAAAGGCACAATTATCTACCGGAGTTAAAGGCACATGGGGTTATTTAGATCCGGAATACTACGCAACCCAGCAGTTAACTGAGAAGAGTGACGTGTATAGCTTTGGAGTTGTTATGCTTGAATTGATCACCGCTAAACCGGCAATTGAGAAAGGGATATGTTTAGTCGGTGAAGTGATTCGACTAACAAACAAGAGTGACAAAGTGTATTACGGATTGATGAATATAATAGACGCAACCATTAGAAATGAGATCCCAAATGTAAGGGAGTTTGGAAGGTTCTTGGAGTTGGCCATAAAATGTGTGGAAGAATCAACTATAAATCGCCCCACGATGAGTGAAGTGGTGAAAGAAATTGAAAGTATGTTACAAAATATATGTTTGGGAGGCCCTCCTTAA 2754 41.39 MEEATISAKTLPFLAFFFLLGLHNTFSDTDPNDVQVLLSLKEEWKNTPPTWKTSVDPCGDLWEGVTCDGSRVTELKLPSMGLEGHLSGAIGDLTELTTLDLSFNENLTGPLSPRLGDLRNLRSLILAACGFSGNIPEHLGNLTQLMSLALNSNKLIGPIPPTLGKLSKLVLLDLMENKLNGPLPVSTSDSPGLDLLHQAQHFHLSKNKLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNALEVLRLDRNSLTGMVPSNLTKLRQIMHLNLAHNKLTGPLPNLTQMTSLCVVDLSNNSFDTSAAPDWFSSLPSLTTLIVEFGQLKGSVPETIFSLPQIQQIKLKYNLFDGTLNMVGNINEHLELVDLENNRITELAISGYNKTLMLGGNPACNVVHILEENACQNSQLAPKPNFPSHVNCETRPCSTGEKNNPQSCECQCPYVGSLHFRGPSIRELSNDTLFLLLKDKLSEKLHLPIGSIVIQNAEFDSDDYLQIQLELYPPFGKVFNYSEILRIASALSHQTFLLPAEFGSFYFIPPQYPFSAPDERNLGSNRWLIGIAIGCSLLVLSLIGLGIYAIKQKKRVSKAISLSRPFSSWSSTEQASGDAPQLKGAIYFSYDELRKMTNNFSISNEIGVGGYGKVYRGMTGYGQMFAIKRARQGSKQGAFEFKTEIELLSRVHHKNLVALVGFCCEQGEQMLVYEFMPNGSLQDILGTSYIHLDWKRRLMIALDSARGIAYLHEFANPPAIHRDIKSSNILLDEYLNAKVADFGLSKPAFDHGKAQLSTGVKGTWGYLDPEYYATQQLTEKSDVYSFGVVMLELITAKPAIEKGICLVGEVIRLTNKSDKVYYGLMNIIDATIRNEIPNVREFGRFLELAIKCVEESTINRPTMSEVVKEIESMLQNICLGGPP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8825713 8832001 - CmoCh20G010280.1 Cmo20g01028 405345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01028 917 Gene3D Transferase(Phosphotransferase) domain 1 710 912 - -
Cmo20g01028 917 ProSiteProfiles Protein kinase domain profile. 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01028 917 SUPERFAMILY Protein kinase-like (PK-like) 614 909 IPR011009 -
Cmo20g01028 917 SUPERFAMILY L domain-like 31 305 - -
Cmo20g01028 917 Gene3D Ribonuclease Inhibitor 289 443 IPR032675 -
Cmo20g01028 917 Gene3D Phosphorylase Kinase; domain 1 605 709 - -
Cmo20g01028 917 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Cmo20g01028 917 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Cmo20g01028 917 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Cmo20g01028 917 PANTHER LRR RECEPTOR-LIKE KINASE 14 911 - -
Cmo20g01028 917 Pfam Protein tyrosine and serine/threonine kinase 636 903 IPR001245 GO:0004672|GO:0006468
Cmo20g01028 917 SMART serkin_6 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01028 917 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 911 - -
Cmo20g01028 917 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Cmo20g01028 917 SUPERFAMILY L domain-like 289 399 - -
Cmo20g01028 917 CDD STKc_IRAK 640 907 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01155 Cmo-Chr14:9107560 Cmo20g01028 Cmo-Chr20:8825713 0 dispersed
Cmo20g01028 Cmo-Chr20:8825713 Cmo04g00967 Cmo-Chr4:4920178 8.84E-30 dispersed
Cmo20g01028 Cmo-Chr20:8825713 Cmo06g00168 Cmo-Chr6:914044 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75170 PF07714 PK_Tyr_Ser-Thr 2.20E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01028 - - csv:101220026 1079.7