Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01053 ATGGCGACCAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACAAATGCTTATTGCTTGGTTGCAATTGGTGGCTCTGAGAACTTCTACAGTGCCTTTGAATCTGAATTAGGCGGTGTCATTCCGGTCGTTAAAACATCCATCGATGGCACGCGCATTATTGGTCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGATCAAGAACTTCAGCATTTGAGAAACAGCCTACCTGACCAAGTTGTTGTCCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTTCTTGTAATGATCATGTTGCTCTCACACATACTGATCTCGACCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACGGTAGCAGGCAACGTTCTCGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCCATTGAAGATTTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACAGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGATAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACGACTGCGACCGAGTTATCGGTGATCGAGAGCGTTTTCAAATTGAGGGAGGGTCAACCAAGCTCCATTGTTGATGAAATGAGGAAGTCGCTAATAGACAGTTACGTGTGA 738 45.66 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTISCNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLIANDWTAFCGSDTTATELSVIESVFKLREGQPSSIVDEMRKSLIDSYV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9696405 9699019 + CmoCh20G010530.1 Cmo20g01053 405370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01053 245 Gene3D - 1 225 - -
Cmo20g01053 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Cmo20g01053 245 SUPERFAMILY Pentein 1 224 - -
Cmo20g01053 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Cmo20g01053 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00654 Cmo-Chr2:4086484 Cmo20g01053 Cmo-Chr20:9696405 3.91E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01053 K03264 - dcr:108209985 457.218