Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g01053 | ATGGCGACCAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACAAATGCTTATTGCTTGGTTGCAATTGGTGGCTCTGAGAACTTCTACAGTGCCTTTGAATCTGAATTAGGCGGTGTCATTCCGGTCGTTAAAACATCCATCGATGGCACGCGCATTATTGGTCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGATCAAGAACTTCAGCATTTGAGAAACAGCCTACCTGACCAAGTTGTTGTCCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTTCTTGTAATGATCATGTTGCTCTCACACATACTGATCTCGACCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACGGTAGCAGGCAACGTTCTCGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCCATTGAAGATTTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACAGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGATAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACGACTGCGACCGAGTTATCGGTGATCGAGAGCGTTTTCAAATTGAGGGAGGGTCAACCAAGCTCCATTGTTGATGAAATGAGGAAGTCGCTAATAGACAGTTACGTGTGA | 738 | 45.66 | MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTISCNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLIANDWTAFCGSDTTATELSVIESVFKLREGQPSSIVDEMRKSLIDSYV | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 9696405 | 9699019 | + | CmoCh20G010530.1 | Cmo20g01053 | 405370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g01053 | 245 | Gene3D | - | 1 | 225 | - | - | |
Cmo20g01053 | 245 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 1 | 245 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | Pfam | eIF-6 family | 4 | 203 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | CDD | IF6 | 2 | 223 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | PIRSF | Transl_init_IF-6 | 1 | 226 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | SMART | eIF6neu2 | 3 | 204 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 1 | 245 | - | - | |
Cmo20g01053 | 245 | SUPERFAMILY | Pentein | 1 | 224 | - | - | |
Cmo20g01053 | 245 | Hamap | Translation initiation factor 6 [eif6]. | 1 | 245 | IPR002769 | GO:0042256|GO:0043022 | |
Cmo20g01053 | 245 | TIGRFAM | eIF-6: putative translation initiation factor eIF-6 | 4 | 224 | IPR002769 | GO:0042256|GO:0043022 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00654 | Cmo-Chr2:4086484 | Cmo20g01053 | Cmo-Chr20:9696405 | 3.91E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g01053 | K03264 | - | dcr:108209985 | 457.218 |